Xiphophorus hellerii (green swordtail): 116710000
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Entry
116710000 CDS
T07363
Symbol
tmf1
Name
(RefSeq) TATA element modulatory factor
KO
K20286
TATA element modulatory factor
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xhe04131
]
116710000 (tmf1)
Membrane trafficking [BR:
xhe04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
116710000 (tmf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
ATG16
Motif
Other DBs
NCBI-GeneID:
116710000
NCBI-ProteinID:
XP_032404654
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All DBs
Position
20:27082371..27093702
Genome browser
AA seq
1147 aa
AA seq
DB search
MSWFNASHLSSFAKQALTTAQKSIDRVLDIKEEDQWGDTVVMPYDDTTTPGKVSVSGGWG
MTQWEAPAEEKATTPPLNSDAITTPVTRTVVDESENFFSAFLSPGDVPVTKAKVVSVPPA
KSQRRTQETEKKSQGALLQIQNEDGIAEPTEPTEQSVEGQTVADGQPDEAESSPAAPYTD
AILLQPVSPVTSPGDHPFSPDCVKTDAESVPSESKTEPEPEDPPEQQVETDAPNSSESPP
SEAKSSTPADPSTPMSTKEVLPGQKDSKPEDRQTDTPSPPVSAFSSGTSTTSDIEVLDHE
SVQSESSASSRQETGESKTGLHLMQGSFQLLTASTCGDFARLEDYHKLTESCGSSSDAFE
RIDSFSMQSLDSRSVSEVNSDDEIPGSRTLASVTAGPSPPTETCPKQEDGAEENAGEEND
GKEEGYAETGKEQSLDEMEESGRSATPVNSEQPDELCAGVDDDAMFGSTCNEEEKSTPPI
TEEMKSVSPAQILELQKVIDDLSSRLEKRESQLLAVSKDKARLEEECDNLKDEVISLKEE
SSTVQSLKDEFTQRIADAERKAQLACKERDIAKKEIKGLREDLSTRLNSSDTMELIREKE
EQIRGLLEEGEKLSKQQLQHSNIIKKLRVKEKECDSRITKQQKKIKEQEEELRHLQQVLD
GKEEVEKQHRENIRKLNGVVEQQEKELSRLQTDDEELQEKNRSLQAALDSSYKELAELHK
AHASRASEAEEVALSREIQAKEQLSLALEKAQEEARIQQEALANQVADLRIALQRTEQQQ
ARKEDYLREEISELQQRLQEAETRNQELSQSVTSATRPLLRQIENLQASLGGQTASWEKL
EKNISDRLADAQTQLAVAVEKERSAAEELLSIKSQLASLESQNSSVRQEKARVLAQLEAE
KSKREKLEDESSREHAELTNLKGEHSRMLEEAKKEKLLLTNQLEMEKMKVEQEKKKCYLA
QEALKEKERKAVTHSVGDPPAASTPSLSRSSSVSGMENAGLHTSVLSQDDCLDHSMGTIT
MSMSGTNLYEAARLSGGSSIMENLQSQLKLREGEIAQLQLEIASLERSRSVMAEELVRLT
NQNDEMEEKVKDIPKLKIQLKDLEQRHNTILQMYGEKAEEAEELRLDLEDVKNMYKTQID
ELLKNQK
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgagttggttcaacgcgtctcacctgtccagcttcgctaaacaagcgttgacgacagcg
cagaagtcgattgaccgagttctggacatcaaagaagaggaccaatggggtgacacggtt
gtaatgccttatgacgacacaacaacccctgggaaggtttcagtgagtggaggatggggt
atgactcagtgggaagcccccgctgaagaaaaggccaccactcctcctctcaactccgac
gccattactacgcccgtcactcgcacagttgtggatgaatccgaaaactttttcagtgcc
ttcctgtcaccaggagatgtcccagtgaccaaagcgaaagttgtgtctgtaccccctgca
aagtctcaaagacgaactcaagagacggagaagaaaagccaaggagctttgctgcagatc
caaaacgaggatgggattgcagagccaacagaacctacagagcagagcgttgagggtcag
acagtggccgacggccagccggatgaggccgagtcctcaccagcagcgccttacactgat
gccatcctcctccagccagtctctccagttacttcccctggtgaccaccctttcagtcct
gactgtgtgaaaacggatgctgagtcggttccatcagaatccaaaacggagccggaacca
gaagatccacccgagcaacaggtagagacggatgccccaaactcctctgagtctcctcct
tctgaagctaaaagctctaccccggcggatccctcaacccccatgtccaccaaggaagtt
ctcccgggtcaaaaagactccaaaccagaggaccgtcagaccgacacgccctctcctccg
gtcagcgctttctcctcaggaacttccaccacaagtgacattgaagtgctcgaccacgag
agcgtgcagagcgaaagctcggccagctccaggcaagaaaccggcgagagcaaaaccggg
cttcacctgatgcagggctcctttcagctcctcactgcctccacctgcggggatttcgct
cgactggaagactatcacaaactcacggagagctgcggctcctcctcggacgctttcgag
cgcatcgattcgttcagcatgcagtcgctggatagccggagtgtcagcgaggtgaactcg
gacgacgagatccccggcagccggactctggcctccgtcacggcgggaccctctcccccg
acagagacgtgtccgaagcaggaggacggagcggaggagaacgctggcgaggagaacgat
ggcaaggaggagggatacgccgagacggggaaggagcagtcgctggacgagatggaggag
agcggaaggagcgcgactcctgtaaacagcgagcagccagatgagttgtgcgctggtgtt
gatgatgatgcgatgtttggttctacctgcaacgaagaagaaaagagcactccaccaatc
acagaagagatgaaaagtgtctcacctgcccagatactggagctgcaaaaggtcattgat
gatctgtcaagccgccttgagaagagagagtctcagctgctggctgttagcaaagacaag
gccaggctggaggaggagtgcgacaatttaaaagatgaagtgataagcctgaaggaagag
agctccactgtgcagtccctgaaagacgagttcactcagcgcatagcagacgcagaaaga
aaggctcagctggcctgcaaggagcgagacatcgccaaaaaggagatcaaaggcttgcga
gaagatcttagtacaagactgaactcgagtgatacgatggagctcatcagagagaaggag
gagcagatcagaggtctgctggaagagggtgaaaaactgtcgaaacagcagctgcaacac
agtaacatcatcaagaaactgcgtgtgaaggaaaaagagtgtgacagcaggattaccaag
cagcaaaagaaaatcaaggagcaagaggaggagcttaggcatctgcagcaggttctagat
gggaaggaggaggtggagaagcagcacagagagaacatcaggaagctgaacggtgtggtg
gagcagcaggagaaggagctgagcaggctgcagacggatgacgaggaactgcaggagaaa
aacaggagcctccaagctgccctagacagctcttataaagagctggcagagcttcacaag
gctcacgctagcagagcgagcgaggccgaagaggtggctctaagtagggaaatccaggcc
aaggagcagctgagtttagctcttgaaaaggctcaggaggaggccaggatccagcaggag
gcgcttgccaaccaggtggctgacctgaggatagctctgcagaggacggagcaacagcag
gccaggaaagaagattatttgagggaggagatcagtgagcttcagcagagactgcaggag
gcagagaccaggaaccaggagctcagccagagcgtcacctcagcaacgcggcctctgctg
cgacaaatcgagaacctacaagcctcgctgggcggacaaaccgcgtcctgggagaaactg
gagaagaacatttccgataggctagcggacgcccagactcagctggctgtcgccgtggag
aaggagcgatcggcagcagaggaactgttgtccatcaagtcccagctggcttcgttggaa
tcccagaattcctcggtccggcaggaaaaagccagagtcttggctcagctggaggcggag
aaaagcaaaagggagaaactggaggatgagagcagcagggagcatgcggaactaacaaac
ctgaaaggagaacacagtcggatgctagaagaggccaagaaagaaaagctactgctgacc
aaccagctagagatggaaaagatgaaggtggagcaagagaagaagaaatgctatctcgca
caagaagcactaaaggaaaaggagcgtaaagctgtaacacattctgtcggagatccgcca
gcggcttccacgccgtccttgtcccgctccagctccgttagcgggatggaaaacgctgga
ctgcacacctctgttctgtcgcaggatgactgtttggaccactcaatgggaacaatcacc
atgtcgatgagtggaaccaacctgtacgaggcagccaggttgtctggaggctccagcatc
atggagaacctccagtcccagcttaaactgagagaaggagagatagctcagttgcagctc
gagatcgccagtttggagagaagtcgctcagtgatggcagaagagctggttcggctcacg
aatcaaaacgatgagatggaggagaaagtgaaggacatcccaaagttgaaaattcaactc
aaggatctggagcagaggcacaacaccatcctgcagatgtatggagaaaaggctgaggaa
gcagaggaactgaggctggaccttgaagatgtcaaaaatatgtataaaactcagattgat
gaattactaaagaatcagaaataa
DBGET
integrated database retrieval system
