Xiphophorus hellerii (green swordtail): 116712051
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Entry
116712051 CDS
T07363
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116712051 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xhe03032
]
116712051 (topbp1)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116712051 (topbp1)
DNA replication proteins [BR:
xhe03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
116712051 (topbp1)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
116712051 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
116712051
NCBI-ProteinID:
XP_032407647
LinkDB
All DBs
Position
21:complement(18329725..18342032)
Genome browser
AA seq
1512 aa
AA seq
DB search
MSKAGKQDFIVKFVESEGSKPDYAVKAYEAILELQSEKYLKTIQEEDVLQMDRKDKSLFV
FIKFTTPAFLHCKKLGCRIVSPLVVLDCLQQQRCVPKAEKPVYNMAMADVTISCTSLDKA
TRGEVMDLVQLMGGRVYLDLNVSVSHLIAGEVGSKKYLVAANLGKPILLPTWVKACWEKS
QDSLFRYTDLPVEDYLCPVLLGCIVCVTGLSSTERKEVQRLCEQHGAKYTGQLKMNECTH
LIVSEPTGQKYECARKWNVYCVSLHWLFDSIEKGYSQDESRYMVQRKSSTTTQPNTSTPT
GTSKREDGPSLLGLSNISVNTSAAINDTALTNVTMSRMETPDPIDRLDLTVCPADDVLDG
CKLYLSGFPEKNLEKLRRLVSAAGGLRFNQPREDLTHVIVREVDQELQKFLSTATHRPHV
VTAQWLLDCFSKGMLVPEDRYLHPDCLPPASDAVAVSFSARLAARHRSSSGPPVANPNTP
KEPITDEDLLSQYMDDDPTVVDLAPENTSMKSFSAAAEPQPESWTPLHTGGSEQEPLPQG
SLFSGKSFLLVGFGVEAEAQLSALLKEQGGRLLSGRSRVVADFAVVPQLGCTVEATVDEV
VTDTWLVMCVENERVLPLSSNPLFTPIPVREGYLPLKDCVLSVSQFTGAERESLVELAKH
LGANVQDYFVRLANQKKGMLASTHLVLQTPDGTKYQAAKKWGLPAVTMHWILESARTGRR
VTEEKYLVDLPSSPEKEDESFVSGSQKAAPLQPARCSPEIPLLGPQGGKAVTPLDCGRFQ
SKMFRSVLDKMKPRENPSTLTPNQDGGRGKPLQKEPSLQLDTPSRFLVRDQLFRPSFNFK
DALKDLETPSGRPKPGERVETPLTDVINRNLKIALANSSVNNATEMQEVSASPQLAKTID
KEIPQKDSGPLTGVVICVGKKLSKMQSELNAIAASLGADFRWACDNTVTHYIYQGRVGDN
SREYKAVKEKGLQVVSQYWLHACAEEQRHVSESLYPFTYNPKMSLNLSQVPSSSQRSPPL
TRTQRKDATESKHNKSAVVAAEKSAGVHPVSNRCVDQDEVNDTTEKRDTLEMRENLQRQL
QEIMSATKMTTGRRASVRLARMGSGCTDSGPNTPEGSRAGRSGSRRTLEALRVSREAVTD
INTEPSQSEQIVWDDPTAREERAKLADNFQWPGSPSQHSEPMAAAPPPTAENGPHFKDSM
TDSELVEMAACDVINQQMGQKVVAPSSEDPEEDILTPQAPSIAFPLAKPLVAPEPQEEKE
EENQPPRFQLSSLSPQERIDYSHLIEELGGVILDKQSFDPSCSHIIVGSPLRNEKYLAAM
AAGKWILHRSYLEACRSVGHFIQEDDYEWGSCSILEALPSITSQQKRLALAAMRWRKALQ
GSSEHDGAFSGWTVMLNIDQSREPGFRRLLQSGGAKVLPSPSPSLYREASHLFADFGRLK
PGDFRVDVAEATAQGVTCLKPEYIADYLMQEPTPPVELYCLTAAPPEEDPCTPSRKRKAA
ADPSKLKKSRLN
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaagcagggaagcaagactttattgtgaagtttgtggaaagtgaaggatccaaa
ccggattatgcagtcaaagcatatgaggccattctggagctgcagtctgaaaagtattta
aaaaccatccaggaagaagatgttttacagatggaccggaaggacaagtctctgtttgtt
ttcatcaaattcaccactccagctttcctgcactgcaaaaagcttgggtgcagaatagtg
agtccactggtggtgctggactgcctgcagcaacagcgctgtgtccctaaagcagaaaaa
ccagtgtataacatggcgatggctgacgtcactatttcctgcaccagtctagataaagca
acccggggagaggtgatggatctggtgcagctcatgggcggacgggtctatcttgatctg
aacgtatctgtctcacacctgattgctggggaggtgggaagcaaaaaatacctggtggct
gccaacttgggaaaacccatactgctgcctacatgggtcaaagcatgctgggaaaaatca
caagacagtctcttcaggtacacagacctgccagttgaggactacctgtgccccgtgctg
cttggctgtatcgtttgtgtgacgggcctctccagcacagagcgcaaagaggtgcagcgg
ctctgtgagcagcacggggccaaatacaccggccagctcaaaatgaacgagtgcacacat
ctcattgttagtgaaccgacaggtcagaagtacgaatgcgccaggaagtggaacgtgtat
tgtgtgtctttgcactggctgttcgacagcatagagaaaggttactctcaggatgaaagc
aggtacatggtgcagcgcaaatcttcaacaaccacacagcccaacacctcaactcctaca
ggcaccagcaagagagaagatggcccatctctgttgggcctgagcaacatttctgtcaac
actagtgcagcgataaacgacaccgctctcaccaacgtcaccatgagtcgcatggagacg
ccagaccccatagaccgtttagacctgactgtgtgcccagcagatgatgtgttggatggt
tgtaagttatatttaagtggtttcccagagaagaacctggagaagctgcggcggctcgta
agcgctgctggaggcctgcgcttcaaccagcccagagaggatctcactcatgtcattgtg
agagaagtggaccaggagctccagaaatttctgtccacagcaactcacaggccccatgtg
gtaacagcacagtggctgctggattgtttctccaaaggcatgttggtcccagaggacaga
taccttcacccggactgtctccctccagcttcagacgctgtagctgtctccttctctgca
cgtcttgcggcgagacatcgctcgtcttccggcccgcctgttgccaacccaaacactccc
aaggaaccaataacagacgaggatcttctttcacagtacatggacgacgaccccacagtg
gttgatctggcaccagagaataccagcatgaagtcctttagcgcagctgcagaacctcag
cctgagtcctggacgcccctccacactgggggatcagagcaagagccactgccacagggt
agtctgttttctgggaaatccttcctgcttgttggtttcggtgtcgaggctgaggctcag
ctctcggcgctgctgaaagagcaaggaggcaggctgctgtctggccgcagccgagtggtg
gcggactttgctgtggtccctcagctgggctgcacagtggaggccaccgtggacgaggtg
gtcactgacacatggctggttatgtgtgtggagaacgagcgcgttctgccgctgtcctct
aaccctctgtttacccccattcctgtgagggaggggtacttacctctcaaagactgcgtt
ctgtctgtcagccagtttactggagcagagagggagtctctggtggagctggccaagcat
ctcggagccaatgtccaggattactttgtgcgcctggccaaccagaagaaaggcatgctg
gccagcactcacctggtgttacagacccctgatggaacaaagtatcaggcagctaagaag
tgggggcttcctgccgttaccatgcactggatacttgagtctgcgcggacagggaggagg
gtgacagaggagaaatatctggtggatctgccctcctctccagagaaagaagacgagagc
ttcgtcagcggatcccagaaagcagctccgctccaacccgctcgttgttccccagaaatc
ccgttgctgggtccgcagggcgggaaagcggtcacgccgcttgattgcggtcgctttcag
agcaaaatgtttcgatctgtgttggacaagatgaagcccagagaaaacccgagcacactg
acaccaaaccaagatggcggcagagggaaaccactccagaaagagccgtccctgcaactg
gacactccctctcgatttctggtcagggaccagctcttcaggccgtcctttaacttcaag
gatgcactcaaagatttggagactcctagcggaagacctaaacccggggaaagggtggaa
actccacttaccgacgttatcaacaggaacctgaagattgctctggcaaacagctcagtg
aataatgccacagaaatgcaggaagtctctgccagcccccagctggcaaagacaattgac
aaggagatcccacagaaagactcaggacccctgactggtgttgtgatctgcgtggggaag
aaactgagcaaaatgcaaagtgaactgaatgctattgctgcttcgcttggagctgacttc
aggtgggcctgtgataacacagtgacgcactacatctaccagggtcgtgtcggagacaac
tcccgcgaatacaaggcagtgaaggagaagggcctgcaggtggtctcccagtactggctg
catgcttgtgctgaggagcagaggcacgtctcagagtctctgtatcctttcacttataat
ccaaagatgagtctgaacctcagccaggttcccagcagctcccagagatctccgccttta
acacggacacaacgcaaagacgcgactgaatcaaaacacaacaagtctgcagttgttgct
gcagagaaaagcgcaggtgtgcatcctgtaagtaatagatgtgttgatcaagacgaggtg
aacgataccacagagaaaagagatactctggaaatgagagagaacctgcaaagacagctt
caggagatcatgtcggccaccaaaatgacaacaggcaggcgggcttctgtcagacttgcc
aggatgggatcaggctgcaccgactcgggtccaaacactcctgaaggcagccgggctgga
cgcagtgggagcagacgtactctggaagctctgagggtctccagagaagcggtaacggac
attaacactgagccgtctcagagtgagcagatagtttgggacgatcctacagccagggag
gagagagcgaagctggctgataacttccagtggcctgggagtccatcacaacactcggag
cccatggcggcagccccgcctcccacagcagaaaatggaccgcacttcaaggactcaatg
acggactctgagctggtagagatggctgcttgtgacgttataaaccagcaaatgggtcag
aaggtcgtggcgccttcatcagaggatccagaagaggacatcctcactcctcaagctccc
agcatcgccttccctctcgccaaacctctagtagcaccagagccacaggaagagaaagag
gaagaaaatcagccgcccagatttcagctgtcgtcgctcagccctcaggagcgaatcgat
tacagtcatctgatagaggaactcgggggcgtcatcctggacaagcaatcttttgacccc
agctgctcccacatcattgtagggagtccactgcgaaacgagaagtatctggccgccatg
gcagccggcaagtggatcctgcatcgctcgtacctggaggcgtgtcgctccgtgggacac
ttcattcaggaggatgattatgaatggggcagctgctccatcttggaggctctgccctcc
atcacctctcagcagaagagactggccttggccgcaatgcgctggagaaaagctttgcag
ggaagctctgaacatgacggagctttcagtggctggaccgtgatgctgaacatcgaccag
agcagagagccgggtttcaggcggttattgcagtctggtggagcgaaggtgctgcccagc
ccctccccgtcactctacagagaggcctcacatctgttcgcagacttcggtcgtctcaaa
cccggagacttcagagtggacgtagctgaggccacagcacaaggagtaacatgcttgaaa
ccggagtacattgcagattacctcatgcaggagccgacgccgcccgtcgagttgtactgt
ctgactgcagctccgcctgaggaagatccatgcacaccgtcccgtaagcgtaaagcagca
gccgacccctccaagctgaaaaagagccgtctgaactga
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integrated database retrieval system
