Xiphophorus hellerii (green swordtail): 116717198
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Entry
116717198 CDS
T07363
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 4-like isoform X1
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116717198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xhe03036
]
116717198
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
116717198
Chromatin remodeling factors
NuRD complex
116717198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
ResIII
HDA2-3
DEAD
PHD_2
zf-HC5HC2H_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
116717198
NCBI-ProteinID:
XP_032414282
LinkDB
All DBs
Position
3:13042885..13075747
Genome browser
AA seq
1979 aa
AA seq
DB search
MSCSEDERDDFGAPEEHSVLHDEEEPEDVVSDLDEAPKSKKKKKAKKSSRESRSSKRQRP
IREELPVSSPEHLMGMEAAERDADEGVMRSESEGSDYAPGRKKKKRSSSAKDKKKGGGAG
EKGGSKSKRKDPEPEDDDDDDDDCQPKSSAQLLEAWGMKDIDHVFTQEDYSSLTNYKAFS
QFVRPLIAAKNPKIPVSKMMTLMMAKWREFSTNNPLKGCATANAALAAANVAAAVENMVA
VGTDGGVEAASAASPVTTPSPAPASVAAAAPTPAPPPAPAPAPPLRKAKTKEGKGPNARK
RSKPTPKPPPKPKPKKVAPLKIKLGGLNSKRKRSSSDEDEPDGDSDFEDGSFSVSDGSIR
SSRPKKKSKNAKKKKKVETEDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPD
MEKAPEGKWSCPHCEKEGIQWEARDDLSEAEGEDDDDRRDDGMEEEDDHHIEFCRVCKDG
GELLCCDTCPSSYHIHCLNPPLPEIPNGEWICPRCKCPPMKGKVQKVLTWRWGEPPASMP
VPRPADLPADAPDPPPLAGRREREFFVKWCNMSYWHCSWVLELQLELNCQVMFRNYQRKT
DMDEPPPVDFGGEGDDDKSTKRKNKDPLFVHMEEDFGRFGVKIEWLMIHRVLNHSVDKKN
NVHYLIKWRDLPYDQSTWESEDMDIPEYDTYKQIYWNHRELMMGEEGRPGKKLKKTVKVK
KAERPPANPVVDPTIKFDRQPDYLDSTGGTLHPYQLEGLNWLRFSWAQATDTILADEMGL
GKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAV
IRENEFSFEGNAIRGGKKASKMKKDSTVKFHVLLTSYELITIDQAVLGSIEWACLVVDEA
HRLKNNQSKFFRVLNNYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA
DIAKEDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKFILTRNFE
ALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPAAATEAPKLPNGMYEGTALTKASGKLMLL
HKMMKKLKEGGHRVLVFSQMTKMLDLLEDFLENEGYKYERIDGGVTGNMRQEAIDRFNAP
GAQQFAFLLSTRAGGLGINLASADTVIIYDSDWNPHNDIQAFSRAHRIGQNRKVMIYRFV
TKASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEVGEGD
NKEDDSSVIHYDDHAIDRLLDRNQDATEDTELQSMNEYLSSFKVAQYVVKDEDDEEEEVE
REVIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRTRKPVNYNDGSQEDRGIRQDW
QEDQSDNQSDYSVASEEGDEDFDERSEANARRPNRKGLRNDRDKPLPPLLARVGGNIEVL
GFNARQRKAFLNAVMRYGMPPQDAFTNQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGADG
AETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHVNGQWSMPWMAELEENKRAAALA
AGEDPKTPSTGTPADTQPNTPVPEDLSKSEDKDEIKREGEESKVAKKGEDPEIIEIPDES
EKSPASEKKEELGAERRVTDEGDEGKEKDGENTSKDKEEKSKAAAEREASANNKSDGSDG
RVDSEEDRSKAEDSKDEKMDTTSPAEDRKEQKEEKDGIKTDDCGKLQNGENGKEGGTAAS
AVNISEEKKKASKQRFMFNIADGGFTELHSLWQNEERAATVTKKTYEIWHRRHDYWLLAG
IIQHGYARWQDVQNDVRFAIINEPFKGEMSRGNFLEIKNKFLARRFKLLEQALVIEEQLR
RAAYLNMTEDPAHPSMALNTRFSEVECLAESHQHLSKESMSGNKPANAVLHKVLKQLEEL
LSDMKADVTRLPATIARIPPVAVRLQMSERNILSRLASRGPDVTAQNQSQTSQQMQVPR
NT seq
5940 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgtagcgaagatgagagggacgactttggagcgccagaggagcattcagttctt
cacgatgaagaagagccggaggatgttgtctccgacctggacgaggcacccaagtcgaag
aagaagaagaaagccaagaagagcagcagagagagccggagcagcaagaggcaaagaccc
atccgggaggaactgccggtcagctccccagagcacctgatgggaatggaggcggcagag
agggatgcagatgagggagttatgcggtcagagagtgaagggagtgattacgcccctggg
agaaaaaagaagaaacgctcaagctctgcaaaagacaagaagaaaggaggtggggccgga
gagaaaggaggctctaagagcaaacgcaaagatccagaaccagaagatgatgatgacgac
gacgatgactgccagccgaaaagctccgcccagctgctggaggcctggggcatgaaggac
atcgatcatgtctttactcaggaagactacagctctctcaccaactacaaggctttcagc
cagtttgttagacctttaattgcagcaaagaatcccaaaattcccgtatccaagatgatg
accttaatgatggctaagtggagagaattcagcacaaacaacccgctgaagggttgcgcc
acagccaatgcagcccttgcagctgccaatgtggctgcagcagtggagaacatggtggct
gtggggactgacggaggtgtggaggctgcctctgctgcctcccctgtgactactccctct
cctgcccctgcctctgttgctgctgccgctccaacacctgcaccgcccccagcgccggct
ccagctcccccactccgcaaggccaagacgaaagagggaaaaggtccaaatgctcgcaaa
aggtcaaaacctacaccgaagcctccccctaagccaaaacccaagaaggtggccccgctt
aaaatcaaactagggggcctcaacagcaagagaaagcgctcctctagcgatgaagacgag
cctgatggcgacagtgactttgaagacggtagtttctcagtgtctgacggctccatccgc
agcagccgtcctaagaagaaatccaaaaatgcgaaaaagaagaagaaagtggagacagaa
gatggcgatggctatgagaccgaccaccaggactactgcgaggtgtgccagcagggagga
gagattattttgtgtgacacctgtcccagagcttatcacatggtgtgtctggaccctgac
atggagaaggctccagagggcaagtggagctgtccacactgtgagaaggaggggatccag
tgggaggctagagatgatctgtccgaggctgaaggggaggatgatgacgacagaagagat
gatggcatggaggaggaagacgaccaccacattgagttctgcagagtgtgtaaggacggc
ggagagctgctctgctgtgacacctgcccctcctcctaccacatccactgcctgaaccct
cctctccccgagattcccaacggagagtggatctgcccccgctgcaagtgtcccccaatg
aaaggaaaagtgcagaaggttttaacatggcgttggggggaacctccagcctccatgcct
gtcccccggcctgctgacctgcctgctgatgctcctgatccccctcctctggccggccgt
cgggagagggagttctttgtcaaatggtgcaatatgtcctactggcactgctcctgggtg
ctggagctgcagctggagctgaactgccaggtgatgttccgtaactaccagaggaagacc
gacatggacgaacctccacctgtggactttggaggcgaaggcgatgatgacaagagcaca
aaaagaaaaaacaaagatcctctgtttgttcacatggaggaggactttggacgatttggg
gttaagatagagtggctgatgatccaccgcgtccttaaccacagtgttgacaagaagaac
aacgttcattacttaatcaaatggagagatctgccctatgaccagtcaacctgggaaagt
gaagacatggacatacctgagtatgatacgtacaaacagatatactggaatcacagagag
ctgatgatgggcgaggaggggagaccgggcaaaaaactgaagaaaacggtcaaagtcaaa
aaggcggaacggccacctgctaatccagttgtagatcccaccatcaagtttgatcgccag
cccgactacctggacagtacaggcggcacgctgcatccctaccagctggagggcttgaac
tggctccggttctcatgggctcaggccaccgacaccatcctggctgatgagatgggttta
ggcaaaacagttcaaacggctgtcttcctgtattctctgtataaggagggtcactccaaa
ggtcccttcctggtcagcgctcctctgtccaccattattaactgggaaagagagtttgag
atgtgggcccccgatatgtacgtggttacctatgttggggacaaagacagcagggctgtt
atcagagagaacgagttctcgtttgagggaaacgccatcaggggagggaagaaggcctcc
aagatgaagaaagactcgacagtgaagttccatgttctgctgacgtcctatgagttgatc
accatcgaccaggctgtgctggggtccatcgaatgggcttgcctggtcgttgatgaggca
cacagactcaaaaacaaccagtccaagttcttcagagtgttgaacaactactcgctgcaa
cataagcttctgctgactgggactcctcttcagaacaacctggaggagcttttccacttg
ttgaacttcttaaccccggagagattcaacaaccttgaagggtttctggaggaatttgca
gacattgccaaagaggaccagatcaagaaactccatgacatgctgggaccacacatgctc
aggaggctgaaggctgatgtgtttaaacacatgccttcgaagacagagctcattgtccgg
gtggagctgagccccatgcagaagaaatactacaagtttattctgacacgcaactttgag
gcattgaacactcgaggaggtggaaaccaagtgtctctgctcaacgttgtcatggacctt
aaaaagtgctgcaatcatccctacctctttccagccgctgcaacagaggctcccaaactt
ccaaatggcatgtatgaaggtactgccctgaccaaagcttcagggaagctgatgcttctt
cacaagatgatgaagaagctgaaagagggaggccacagggttctggttttctcccagatg
accaagatgctcgacctgctggaggacttcctggagaacgaaggctacaaatatgagagg
attgatggcggagtcaccggcaacatgagacaagaagctatcgatcgctttaatgctcca
ggagctcagcagtttgctttcctcctctcgacccgggccggtggtttgggtattaatctc
gcttctgctgacacagtcatcatctacgactctgactggaacccccacaatgacatccag
gctttcagcagagctcatcgcattggccagaacaggaaagtgatgatctatcggtttgtt
accaaagcatctgttgaggagaggatcacacaggtggcgaagaagaagatgatgctgact
cacctggtggtgcggcccggacttggctccaagacgggctccatgtcaaagcaggaactt
gacgacattctcaagtttggaaccgaagagctgttcaaggatgaagttggagaaggagac
aacaaggaggatgacagcagcgtgattcactatgatgaccacgcaattgaccgcttgctg
gacaggaaccaggatgccacggaggacacggagctgcagagcatgaacgaatacctcagc
tcctttaaagtggcccagtatgttgtcaaagatgaggatgatgaggaggaggaggtagaa
agagaggtgatcaagcaggaggaaagcgttgatcctgactactgggagaaactgcttcga
caccattatgagcagcaacaggaagatctcgcccgcaatttgggcaaaggcaaacgtact
cgaaagccggtcaactacaatgacggctcccaggaggaccgaggtataagacaggactgg
caggaggatcagtctgacaaccagtctgattactcagtggcctcagaggagggagacgag
gactttgacgaacgctctgaagctaacgcccgcagaccaaaccgcaaaggcttgaggaac
gacagagacaagcctctgcctcctttgctggccagggtggggggcaacattgaggtgctg
ggcttcaacgcacggcagaggaaagcgttcctgaacgcagtgatgcgttatgggatgcct
cctcaggatgccttcaccaaccagtggctcgtccgggacttgcgagggaaatctgagaag
gaatttaaggcttatgtgtctctgtttatgcgacatctttgtgagccgggagccgatgga
gcagaaaccttcgcagatggcgtcccacgcgagggtctgtcgaggcagcacgtgctcact
cgcatcggagtgatgtcactaataaggaaaaaagttcaggagtttgaacatgtgaacggt
cagtggtcgatgccctggatggcagagctggaggaaaataaaagagcggcagctttggct
gcaggtgaagacccgaaaaccccgtccacagggacgcctgcagacacacagcccaatact
cccgtgccagaagatttgtctaaatcagaggacaaggatgaaattaaaagagaaggagaa
gaaagcaaagtggctaaaaaaggagaggaccctgagattattgaaatcccagatgaatct
gaaaaatcccctgcttctgaaaagaaagaagagctgggggcagagaggagggtgacagac
gaaggcgatgaagggaaggagaaagatggggagaacacgagcaaagacaaagaagagaag
agcaaggctgcagctgagagggaggcctctgctaacaacaagagcgacggttcagacggc
agagtggattcagaggaggacaggtcaaaagctgaagacagcaaagatgagaagatggac
actacgtcgccagcagaggacagaaaagagcaaaaggaggagaaagacgggataaaaaca
gacgattgtggaaaactgcagaatggcgagaacggcaaagagggaggaacagctgcatct
gcggttaacatcagtgaggagaagaagaaagcctccaagcagaggttcatgttcaacatc
gcagacggtggtttcacagagcttcactccctgtggcagaatgaagagagggccgccacc
gtcaccaagaagacttatgagatatggcaccgtcgccatgattattggctgttggctgga
atcatacaacacggctacgctcgatggcaggatgtgcagaacgatgtgaggtttgccatc
atcaacgagcccttcaaaggggaaatgagcagagggaacttcctggagatcaagaacaag
tttctggcccggaggttcaagctactggagcaggcgttggtgatcgaggagcagctgcgc
agggcggcctacctgaacatgacggaggacccggctcacccctccatggctctcaacact
cgcttcagcgaggtggagtgtctcgcagagtcccatcagcacctcagcaaagagtccatg
tctggaaacaagcctgccaatgcagtgctgcataaagtcctcaaacagctggaggagctg
ctgagcgacatgaaggccgacgtcactcgtctgccagccaccatcgccaggatacccccc
gtggccgtgcggctgcaaatgtccgagaggaacatcctgagccgcctggccagccggggg
cccgacgtcacggctcagaaccagtcccagacttcacagcaaatgcaggtgccgcgctga
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integrated database retrieval system
