Xiphophorus hellerii (green swordtail): 116721688
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Entry
116721688 CDS
T07363
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116721688
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xhe00536
]
116721688
Glycosaminoglycan binding proteins [BR:
xhe00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116721688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
116721688
NCBI-ProteinID:
XP_032421468
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All DBs
Position
6:22412221..22512070
Genome browser
AA seq
1856 aa
AA seq
DB search
MEMERWTIRWKTKRRLLDSTLAAVGTLILILQSVRAAEPVDVLKALDFQSSPEGVRKTPG
FCTVRRGSKPDVAYRVTKNAQISAPTKQLFPGGVFPEDFSILFTIKPKARLQSFLLSIYN
KQGLQQLGVEVGRAPVFLYEDQHGKPTPEEYPLFRSINLADGKWHRVAISVEKNSITIFV
DCKKKLTKPLKRSDQAVIDTEGITVFGTRILDDEVFEGDIQQLLILSDPRAAYDYCEHYS
PDCGKPSHHDTPQAQEPEEEYPVYDYGELYEYGEGEVTTDAPPTPGAKTETKAGGEYYTN
EYDYTEVYGSKPDPPTETSRQGETYDAEIGEDYVTGVDEVGVDPTVAVESAVDPVDPPVK
VQPETDVKEFKEYDMKEYDTKEFVEKPYDYGTYVDYDDYGTTNAKPTPEVYEDEIGPGVP
AETDISVSGGHNYLGQKGEKGEPAVIEPGMLLEGPQGAPGPAGVPGNPGLQGPLGTPGDP
GERGPPGRPGIPGSDGVPGPPGTILMLPFRAGGEAHKGPVITAQEAQAQAILSQARLTMR
GPPGPVGLAGRSGLLGPPGAAGLKGDSGDSGPQGPRGLQGPTGVPGKAGKRGRNGADGAR
GMPGEAGAKGDRGFDGLPGLPGEKGHRGEHGPSGPPGSPGDDGPRGEDGHVGQRGVAGES
GPRGLLGPRGSPGPPGQPGLSGLDGQAGPKGNMGPQGEPGPPGQQGLPGPHGLIGPQGPI
GPPGEKGPQGKQGLAGLGGTDGPPGHPGKEGPPGEKGSTGFPGPIGSIGYPGPRGVKGAE
GVRGVRGDKGEKGEDGFPGFKGDMGIKGDKGEGGVLGPRGEDGPEGPKGKSGPGGEAGPM
GLAGEKGKLGVPGLPGYPGRQGPKGSNGFNGFPGANGEKGARGIAGKSGPRGQRGPTGPR
GGRGARGPTGKPGAKGTSGSDGPPGPPGERGPQGPQGPVGLPGPKGPNGPAGKDGLPGHP
GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPSGERGHPGTPGPPGEQGLPGAAGKEGGK
GDPGPSGHSGKVGPPGLKGFQGARGLPGAMGPGGLKGGEGPQGPPGPIGSPGERGPAGPG
GPIGQTGRNGPQGPPGPAGEKGSPGEKGPMGPAGRDGIQGPVGLPGPAGPQGPPGEDGDK
GEVGGPGQKGSKGDKGERGPPGPTGLQGVVGAPGPAGSDGESGPRGQQGMFGQKGDEGPR
GFPGLPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGAQGPPGGIGAM
GGVGEKGENGEAGNPGPPGEPGTLGLRGEIGEKGETGPPGAAGPPGGRGPPGDDGPKGNP
GPVGFPGDPGPPGEPGAGGLDGLTGDKGDDGEPGQPGPPGPSGEAGVPGPPGKRGPLGSQ
GQEGRQGEKGSKGEAGAEGPVGKTGPVGSQGPPGKPGAEGLRGIPGPVGEQGLPGASGQD
GPPGPIGPPGLPGMKGDSGSKGEKGHPGLIGLIGPPGEPGEKGDRGLPGPQGAGGGKGEP
GIGGAYGPLGPPGPPGLPGAQGQKGSKGSLGSTGQKGDPGLLGPPGPPGPPGDMIQPLPI
QQSSKRSRRQAETQGDEALADYGMDGPGMEGMDDVFGSLNNLKQDIERMKFPMGTQDNPA
RTCNDLHLSQPDFPNGEYWIDPNQGCIGDAIKVFCNFTAGGETCIYPDKKSTGVRISNWP
KESPGSWFSEFKRGKIVSPEDTDISLSMIFDVCFMNFLISLILSSSNYSQLNYVDGGDNS
INAVQMTFLKLLSSSARQNFTYICHQSVAWYDSKADNYDRALRFLGSNDEEMSYDNNPFI
KSLMDGCSMKQGYSRTVLEINTPRIDQLPIIDVMLNDFGESNQRFGFEVGSVCFLG
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atggagatggaaagatggaccatcaggtggaaaacgaaaaggcgtctattagattcaacg
ctagccgcggtgggcacgttaatcctaattctacaaagtgtcagagcagctgaacctgtc
gatgtactaaaagcgctagacttccagagttctccagaaggagtccggaaaacaccaggt
ttctgcacagttcggagaggatccaagcccgacgtagcatatagagtgacaaaaaatgct
cagatcagtgccccaaccaaacagctcttcccaggaggagttttccctgaagatttctcc
attctgttcactatcaagcccaaggctagactccagtctttccttctatctatatacaac
aaacaaggcctccagcagctgggagtggaggtgggccgagcccccgtcttcctatatgag
gaccaacatggcaagcccaccccagaggaataccctttgttccgctccatcaaccttgct
gatggcaaatggcacagagtcgctatcagcgttgagaagaacagcattaccatctttgtg
gactgtaagaagaagttgaccaaaccacttaaaagaagtgaccaagctgtgatcgacact
gaaggcattacagtctttggtaccagaatcttggatgacgaagtcttcgagggtgacatt
cagcagcttttgatattgtcagatcccagagccgcctatgactactgtgaacactacagc
cctgactgtggaaaacccagccaccatgacactccacaggcccaggaaccagaggaagag
tatccggtctatgactacggtgaattatatgaatacggtgaaggggaggtaaccactgat
gctccgcctacaccaggagcaaagactgagacaaaagctggtggagaatattacactaac
gagtatgactacaccgaggtgtatgggagtaagcctgatcctccgacagagacctccaga
caaggcgagacttacgatgctgaaataggggaggattatgtcactggtgtggatgaggtt
ggagtggaccccactgttgctgtggaaagtgctgtggacccagtggacccaccagtgaag
gtgcaacctgaaacggatgtgaaagagtttaaggaatacgacatgaaggaatatgatacc
aaagagtttgtggagaaaccctacgactatggcacttatgtggattacgacgattatggt
accaccaatgcaaagccgacccccgaagtgtatgaggatgagatcggtcctggtgttcca
gcagagacagatatcagcgtgagtgggggacacaattacttgggacaaaaaggagagaag
ggtgaacctgcagtcattgaacctgggatgcttttagaaggaccccaaggagcccctggc
ccagcaggtgttcctggtaacccaggattgcaaggacccctaggtactccaggagatcct
ggtgagaggggtcctcctggccgtcctggtattccaggttcagatggtgtccctggccct
ccaggtaccattctgatgctaccattccgtgcgggtggtgaggcacataagggacctgtg
ataacagcccaagaagctcaggcgcaggccatcctgtctcaggctagactaacaatgaga
ggccccccagggcctgtggggttggcaggaagatctggacttttgggaccccctggggct
gctggactcaaaggtgacagcggtgactctggaccacagggaccaagaggtcttcagggt
ccaactggtgtaccagggaaggcaggaaaaaggggtcggaatggagctgacggtgcacga
ggaatgccaggagaggcaggcgccaagggtgacagaggttttgatggcctccccggtctt
cctggagagaaaggacacaggggagaacacggccccagtggtcctccaggatctccagga
gatgacgggccaagaggcgaagacggccatgttggacagagaggagtggctggagagagt
ggccccagaggtttgcttggccccagagggtccccaggtcctccaggacaacctggtctt
tctggactggatggtcaagctggtcccaaaggaaacatgggtccgcaaggagagccaggt
cctcctgggcaacaaggcctgcctggtcctcatggtctcattggtcctcaaggtccaatt
gggcctccgggtgaaaaagggcctcaagggaagcaaggtctggctggacttggcggtact
gatggccctcctggtcaccctggaaaagaaggacctcctggagagaaaggatccacgggt
tttcctggtccaataggatctatcggctatcctggtccccgtggtgtaaaaggcgctgag
ggagttcgaggcgtcagaggagacaaaggagaaaagggagaggatggattccctggcttc
aaaggggacatgggcatcaagggggacaagggtgagggtggtgtactaggacccagagga
gaagatggccctgaagggccaaagggcaaatcaggaccaggtggagaggctggacccatg
ggtttagcaggagagaagggaaaacttggagtccctggattgcctgggtaccctggaaga
caaggcccaaagggctcgaatggcttcaatggattccccggagcaaacggtgaaaaggga
gcaaggggaattgctgggaaatcaggccctcgagggcagcgtggaccaacaggtccacgt
gggggacgtggagcaagaggaccgacaggaaagccaggtgcaaagggcacctcaggcagc
gatggacctccaggcccacctggagagcggggacctcaaggacctcagggacctgtcggt
ttacccggacccaaaggacctaatggcccagcagggaaagacgggctgccaggacatcct
ggacagaggggggaaacgggtttccaaggaaagactggacctccgggacctggaggggtg
gttggacctcagggaccaactggagagacaggaccaagtggagagcgaggacacccaggg
acccctggtccacccggagagcaaggtctacctggagctgcaggaaaagaaggaggaaag
ggtgatccgggtccttcgggtcattctggcaaggtgggaccacctggattaaaaggtttc
caaggggcaagaggtctcccaggagccatgggtccaggtggcttaaagggaggagaagga
cctcagggtccccccggccccatcggttcccctggtgagagaggccctgctggtcccgga
ggtcctattggtcagacaggacgcaacggcccacaaggaccaccaggccctgccggagaa
aaaggatcccctggagagaaaggtcccatgggtccagctggccgtgacggcattcaaggt
ccagtaggtcttcctggtccagctggtcctcagggtcccccaggagaagacggtgataag
ggagaagtgggcggtcctggacagaagggaagcaaaggagacaagggtgaacggggtcca
cctggcccaacaggtctccagggcgtggttggagctcccggtccagctggcagtgatggt
gagtctgggccaagaggacagcagggcatgtttggccagaaaggagatgaaggtcccaga
ggatttccagggctgccaggacccattggactgcagggtttgcctggccctcctggtgag
aagggagaaaatggagatgtcggaccaatgggtccacccggtcctccaggtcccagaggt
ccacagggccccagtggagctgatggtgcacaaggtccccctggaggtattggtgcaatg
ggcggtgttggtgagaagggagaaaatggtgaagccggtaacccaggaccacctggagag
cctggtactctaggtctccgaggagagattggtgagaagggagaaaccgggccacccggt
gctgccggaccccctggcggcagaggcccccctggagacgatggtcccaagggaaaccct
ggacccgtcggcttcccaggagacccaggtccccctggtgagcctggtgctgggggtctt
gatggtttaactggtgataaaggtgatgatggtgaacctggacaaccgggtcctccaggc
ccatctggtgaagctggagtaccagggcctcctggcaaaaggggacctctcggatctcaa
ggtcaggagggaaggcaaggagaaaagggatctaagggagaagctggagcagagggacct
gtcgggaaaacaggacctgtgggatctcagggcccccctggaaaacctggtgctgagggt
ctgcgtggaattcctggccccgttggtgagcaaggactgcctggtgcatctggtcaagat
ggccctccaggtcctattggaccgcctggacttcctggcatgaaaggtgactctggatcc
aaaggagaaaagggtcatcctggtctaattggtctgattgggcccccgggtgaacccgga
gagaagggagacagaggtctacccggacctcagggtgctggaggtggcaagggagaacct
ggtattggtggtgcatatggcccactcgggcctcctggtcctccaggacttcctggtgct
caaggacagaaaggttctaagggatcactcggttcaactggtcagaagggagatcctgga
ctcttagggccacctggaccacctggtccgcctggtgatatgatccagcctctgcccatt
cagcagtctagcaaaaggagcaggcgtcaggctgaaactcaaggtgatgaggctttggcg
gactacggcatggacgggccaggcatggagggaatggacgacgtcttcggatccctcaac
aacctcaagcaggatatcgagcgcatgaagttccccatgggcacccaggacaatcctgcc
aggacctgcaatgacctgcacctcagccaacctgatttccccaatggtgaatactggatt
gatccgaaccagggctgcatcggagacgccatcaaagtgttctgtaacttcacagcaggt
ggagaaacatgcatttacccagacaagaaatcaacaggagttagaatatccaactggcct
aaggagtcacccggttcatggtttagtgaattcaagcgtggcaaaattgtgagtccagaa
gacactgatataagtctgagtatgatttttgacgtttgcttcatgaatttcttaatttcc
ctaattttgtcttcctccaactattctcagctgaactatgtggacggtggtgacaacagc
atcaacgctgtgcagatgaccttcctgaagctgctgagctcctcagcgcggcagaacttc
acctacatttgccatcagtcggtggcctggtacgactccaaggccgacaactacgacaga
gcgctgcgcttcctgggctccaacgatgaggaaatgtcttatgacaataatcccttcatc
aagtcgctgatggatggctgctcgatgaagcagggctattcaaggacagtgttggaaatt
aacacacctcgcatcgaccagttacccatcattgacgtaatgctgaatgactttggggaa
tccaaccagaggttcggcttcgaggtcggctctgtgtgtttcctcggctag
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integrated database retrieval system
