Xiphophorus hellerii (green swordtail): 116723213
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Entry
116723213 CDS
T07363
Symbol
parp4
Name
(RefSeq) protein mono-ADP-ribosyltransferase PARP4 isoform X1
KO
K10798
poly [ADP-ribose] polymerase 2/3/4 [EC:
2.4.2.30
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03410
Base excision repair
xhe04210
Apoptosis
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
116723213 (parp4)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
116723213 (parp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xhe03032
]
116723213 (parp4)
03036 Chromosome and associated proteins [BR:
xhe03036
]
116723213 (parp4)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116723213 (parp4)
Enzymes [BR:
xhe01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.2 Pentosyltransferases
2.4.2.30 NAD+ ADP-ribosyltransferase
116723213 (parp4)
DNA replication proteins [BR:
xhe03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
116723213 (parp4)
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Centrosome formation proteins
Centriole proteins
116723213 (parp4)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
116723213 (parp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VIT
PARP
VWA_3
VWA
VIT_2
VWA_2
BRCT
BRCT_2
VWA_CoxE
TniB
PARP_reg
Motif
Other DBs
NCBI-GeneID:
116723213
NCBI-ProteinID:
XP_032423849
LinkDB
All DBs
Position
7:complement(28070570..28094106)
Genome browser
AA seq
1289 aa
AA seq
DB search
MGVFDNCSVLLELKNLPFKEKKKLKSIVTLNGGSISFIVNKQCSLVVTSDLSNLSSNRLR
SIQKNQTPVVGFDYLYKCVERGVLLSLDEYKMDTSSSLDPPPPWKSPQRAPLTYKGPTSS
EGPAVEKNNQKFRIYKESDSALPAFPDDFQVAKYSVFGQENGSRFCVLELQSAKGEQGRR
YRVARYLKDDVVSKKTAVMDRLVFLSTSEEALDVYKALSEELDRSELQRMSSLPAEAPHL
GSAPLQQLLLEEKLNSDELSPDVAAFVELLWTEALGCLGNILRVPISRLSLNDVSRAEGL
LLQAQRKLKEGNEEEASSLLDEVFTLLPHREPRPQSPTARFLSQKLDLCQLIRDVLNVSE
MTLNDPKPSSVGKYRALRCHIEAIPRSSSVFQNVAALLADRSVQIQQIMRVNRAVELQTF
QSEIGNVKPLLHSSSPSNFVGIMSRGLLLPHVGVEHHGITRTDVGNLGSGIYFGDALSTS
LKYAKPSETDGSRLLLVCDVALGVSKDLYKRDQTLTKAPEGYHSVHGVRRTKKTTSDFED
DEYVVYSIDQVKIKYVVQFRKEGDEQKTFSPDINLTAEPIESAKNPGLTSEHVEEDLENV
KNPLEDVKAGLLDSSGQQLPLQAVHVKCKLMDLLSQVIIFQKYTNQSSVPIEAKYVFPLD
DSAAVCGFEAFINGKHVVGEVKEKETARKEYKQAIAKGHGAYLMDQDAPDVFTISVGNLP
PGATVLIKVTFVSELVVRDGSILFSLPGSVAPWQESAALNQTTQVSVEKVCVANESAREF
TLDMSVEMPFEISSLTCITHQVKIKRTDCKAVISVLPGQVMGSDGFQMSVTLSEVHLPRM
WVEKHPDKNSQACMLVFYPNFEFDSSSEGSEVVLLLDTSESMKGESFQLAQKIALQVLKN
LKNDVKINIVLFGTDHTEAFLTTQKLNKVQAEAKKFIKSCSSVGGSTELWRPLRALSLLL
PSDGVRNLLLLSDGHIQNAAATLQLLRDNVQHSRLFTCGFSSTANRHMLRALAQAGGGAY
EFFDSKAKYTWAEKVERQVKRMSSPGCSSVSVKWQQFNPRAPPVQAPKQLNALFNDCHTL
VYGFVPHCTQATLLGDLRGQELQTMVSTTELQKTRGTFLHKLTARALIRDYEDGNLDITE
AEHEGKKAELKSFIIDLSKEFSILSQFTSFVAIEERDSEKADDGVTDIPKLVAEEDVDFL
PYINWSLPEDKEKVVVCDAELSEELDRDMMPAELCSTEERSRELKASADIDDMTSLSLQR
ILSLVKSTERDDDRFRELLEEVQTFTHIY
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgtttgacaactgttcagttcttctggagctcaaaaacttgcctttcaaggag
aagaagaagctgaaatcaatagtgacattgaatggaggcagcatttctttcatagtcaac
aaacagtgctctctggtggtgacctccgacttgtccaacctgagctccaacaggctgcgc
agcatccagaagaaccagacgccggtggtcggctttgattatctgtataaatgtgtggag
agaggcgttcttctgtctttggacgagtacaagatggacacttcatcatctctagatcct
cctcctccctggaagtcaccgcagagagctccactaacttataaaggtccgacctcatca
gagggaccagctgttgaaaaaaacaatcagaagttcagaatctacaaagagtcggattct
gctctcccagcattccccgatgatttccaggtggcgaagtactccgttttcggacaggag
aacggcagcaggttttgcgtgttggagctgcagagcgccaaaggtgagcagggacggcgc
tatcgtgtggccagatacctgaaggacgacgtggtgtcgaagaagacagctgtgatggat
cggctggtgttcctgtccacttcagaagaagctctggacgtttacaaggcgctgagtgaa
gaactggatcgctctgagctgcagaggatgagcagcttacctgctgaggcgccacacctg
ggctctgctcccctgcagcagctgctgctggaggagaaactgaactccgatgagttgtcc
ccagacgtggcggcgtttgtggagctgctgtggactgaagctctcggttgccttggaaac
atcctcagagtccccatctccagactcagcctgaacgatgtgagcagagctgaaggcctt
ctgcttcaggctcagaggaaactgaaggagggaaacgaggaagaggcgtcgtccctcctg
gacgaggttttcaccctgctgcctcaccgggagcccagacctcagtcacctacagccagg
tttctgtctcagaagctggatctctgtcagttaatccgggatgttctgaatgtgagcgag
atgaccttgaacgacccgaagccgtcctccgtggggaagtaccgcgctcttcgctgccac
atcgaagccattccccgcagcagctcagtgtttcagaacgtcgccgccctgctggctgac
aggtcggtgcagatccagcagatcatgcgggtcaacagagcggtggagcttcaaacgttt
cagagcgagatcgggaacgttaaacccctcctccattcatccagccccagcaactttgta
ggaatcatgtccagaggtctgctgcttccccatgtgggagtggagcatcatgggattacg
agaacggacgtcgggaaccttggcagcgggatttactttggtgatgctttgagcaccagt
ctgaagtacgccaaacccagtgaaacagacggatcgcgcctcctgctggtctgcgatgtg
gctctgggagttagtaaggatctctataagagagaccagactcttaccaaggctcctgaa
ggctaccacagcgttcatggagtcagacgaaccaagaaaactacatctgattttgaggat
gacgagtatgtggtttactctattgaccaagtgaagataaaatatgtagttcagttcaga
aaggaaggagacgagcagaagactttcagtccggacatcaacctgactgcagaacccatt
gagtctgccaagaacccaggtctcacttcagaacatgtagaagaagatctagaaaatgtg
aagaaccctctggaggacgttaaagctggactgttggacagttcaggccagcagctcccc
ctgcaggccgtccatgtaaagtgcaaactgatggatctgctctcccaggtcatcatcttc
cagaaatacaccaatcagagctcagtgcccattgaggcgaagtacgtcttcccgctggac
gactcagctgccgtgtgcggatttgaagctttcatcaatgggaagcacgtggtgggagag
gtgaaggagaaggagacggctcgtaaggagtacaaacaggcgatagccaaaggccacgga
gcgtacctcatggaccaggacgctcctgatgtgttcaccatcagcgtgggcaacctgccg
cctggtgccactgtcctcattaaggtgacctttgtgtcagagctggtggtcagagacggg
agcatcctgttctccctgccgggtagcgtggctccatggcaggaaagcgctgcgctcaac
cagaccacacaagtctctgtggagaaggtttgtgtggccaacgaatcagcgagagagttt
acgttggacatgtcggtggagatgccctttgagatctctagcctgacctgcatcacccat
caagtcaaaattaagaggactgactgtaaggcagtgatcagtgttctgccgggtcaggtc
atggggtcagatggtttccagatgtctgtcactctctctgaggttcatcttcccagaatg
tgggtggagaaacacccagacaagaacagccaggcctgcatgctggttttctacccaaac
tttgagtttgactccagctctgaaggcagtgaagttgttcttttgctggacacgtctgag
tccatgaagggggaatcgttccagctggcccagaaaatcgccttgcaggttttaaagaac
ctgaagaacgacgtcaaaatcaacatcgttttgtttggaacagatcacacagaagctttc
ctgacgacccagaaactcaacaaggttcaagctgaagccaagaagttcatcaagagctgc
tcctcagtagggggcagcactgagctgtggcggcctctccgggctctcagtctgctgctg
ccgtccgacggcgtgcgaaacttgctgctgctgtcggacggccacatccagaacgctgcg
gccacgctgcagctgctcagagataacgtccagcacagtcgccttttcacctgcggcttc
agctccacagccaatcgccacatgttgagagccctggctcaggcagggggcggagcttat
gagttttttgactctaaagcgaagtacacctgggctgagaaggtggagcgccaggtgaag
cgcatgtcgtctcccggctgcagctccgtctctgtgaagtggcagcagttcaaccccaga
gctcctccggttcaagccccgaagcagctgaacgctctgttcaacgactgccacacgctg
gtttacggctttgtgccccactgcactcaggcgactcttcttggagatttgcgtggtcag
gagcttcaaaccatggtgtcaacaacagagctgcagaagaccagaggaacgtttcttcat
aagctcacagcaagagccctgatcagagactacgaggatggaaaccttgatatcaccgaa
gctgaacacgagggtaaaaaagcagagctgaagtccttcatcatcgatctgagcaaagag
ttctccatactgtctcagttcactagcttcgtggccatcgaagagagggattctgagaag
gcagatgatggcgtcacagacatcccaaagctggtcgcagaggaggatgtggacttcttg
ccatacatcaactggagtcttcctgaggacaaagaaaaagttgtggtttgtgatgcagag
ttatctgaagaattggatcgcgacatgatgcccgcagaactttgctccactgaagagaga
tctagggaactcaaggcatctgcagatatcgacgatatgacctctttatctcttcagagg
atattatctcttgtgaaatctacagagagagatgacgatagatttagggaactcctggaa
gaagtacaaaccttcacacacatttattga
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