Xiphophorus hellerii (green swordtail): 116735279
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Entry
116735279 CDS
T07363
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116735279
03036 Chromosome and associated proteins [BR:
xhe03036
]
116735279
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116735279
Chromosome and associated proteins [BR:
xhe03036
]
Eukaryotic type
Gene silencing
piRNA pathway
116735279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
116735279
NCBI-ProteinID:
XP_032442925
LinkDB
All DBs
Position
16:19691645..19710884
Genome browser
AA seq
2002 aa
AA seq
DB search
MEDKKKKKDEKKKRETSQKVPEQKIKVPEPAKPSCSQPLATPGSASPSPGPVSPSSPSPG
AGGGSAQVPPGGGNNAKQRTAVANGQPSSSASSPSGSQSSQQQQRYMSREVPPRFRCQQD
HKVLLKRGQPPLSSMLLGGGESSTGEVGGGSCWDVAPSLQGAEGPNANADGNTDSNVGSS
SPSPPTSSSFCVAALSSSTTTSTYANSTWGASSSGQSSSQGCRKVFMDGTDLDDWPSITA
GPKLSSEGAGGGMQEQDCPGNNNSSASWGERNMQQKGGTAGGGGGGEGNMDNISPPRSSP
LSSSSSPIECAQPSSVWVSSAASQVEVGQGSAASYNSKVSHLLPGPQESPLGGSSSVPGA
NFNPNVNPSAWPALGQSGTSVPACSASSQHSSVTSASSFSASTTVITTQTLSSVNQTGLY
QQHTETAVGAKTGEQQQQHLGNPGPEPCSGGAGREAGPNQEGVNEGNSEVGGEGEANTSG
SLSSSSAASSSWSAMPPVTSEPGAGASQADGWGGGGTGAQGHEGNVWRFGSQDDKAGWGK
GNGGGSTNPVVSQGAWEGGSTEVNWGGTAESVGSINSAIGSGGEVDGSSISSSTDSGGGG
CLEDSASQNLATMTKAWDNQKGMESGDGTVEEWGGAGGQGGAVGGGGGNSSSSGGGSVAG
SGGGQKERSVRHHSDHSSEADVALLSMLNRSDLDPRVLSNTGWGQTQIKQNVAWDLDTSK
GVGNRNERNPSSSSAFSSATINTTTIRSSRYPSESGSASNDASSGSLNSGPATPRDNWEG
GTKQSTSGPFMPSSTMRKPGSPEDDMQGSQGKAAGGWGEPPPEKEGKGWRTDDQQWGGHR
GGRKNWQDYEQQGSGWGDGAEDKGTGGWKGSTRGETGGWGEEWGKKDSASGAGWGDGRRR
VGSNSDEGSSWGNMDEGGSQRRGWGSGGDVGGGKSHQDWGGAKPNAAQIPNSQAAPTKAQ
NHHHHQQQQQQSPEGFNSQPNVGGGAQLSKNQNQSLGWTAGPIPQISGGAGDPLEPSGWE
EPSPQSISRKMEIDDGTSAWGDPTRYNNKNVNLWDKNSTAPGSKQGPQCPPPAMQQQPPR
RQHSINSNPGSGAVGMWGGAAQSVDDGTTTWSQASDAATSWREPDDSSKSSGWRNPSPNP
SKPGVKSVDSWGGKGDGSIAASRHPSWEDDEDGGGGGVWSSAGSQGSGSSFNSGGWSQSH
AGKRGNIKSGGGDSWMNPVSRQFSNMGLLGDDPGVEKKMDGDKRGINDYNGEMRRGGRSG
GGGGGGGYRMPSSKDMGPGDMGPYGDKMGGHGVFAAGGGGMSQPRGMHQPGMHSMNSSPG
LRAQVPHQFLSAQVPGPMLKQMPSPGGSVGGVGGVGGVGSVGGVSGGVFPPQISPQQLAV
LSNIYPHMQQFHLACQLLLQQQQQQQQQVLQNQRKFPQPQPLRQQTDPQQLARIMAILQQ
RQQQVGAGGATAGGGNSKLSPSHLGGGVSKQSMVDPLPHTGMGGPLSDLHAKSQGMYSGL
TAGGNLSTLELSPMMGGMKDMSGQQSRFKWMMEGHSPAPSPPDTALHKNGPVPSTIKVRG
GSPYSQYEMLGSEGLGIPPQGSADSWHRTPGSKMGNKPATSSWPPEFQPGVPWKGIQSTG
DPESDPYMTPGRVLGSPASPNLNDPDHPLLRDNIGPNPSLNTSLPSPGAWPYSASDSPLS
NAHSTGKYAEYKPSWPPEPIGQNKLWKTNRSSSQLPRPPPGLTNQKQASPSPWGTGGPRL
ARSWGGMNQESRFGSGSAWSDGTSRSSCWLLLRNLTPQIDGSTLRTICMQHGPLLTFHLG
LTQGSALVRYNSRQEAAKAQGALHMCVLGNTTILAEFVSEEEVARYFAHSQAEGAGSGGA
AGNGAPGSSGTGAAVASSGGSSPGSERPAVGSSSGGNGNGAGGGERSSGSGWQSLDGTGA
SSEASSAQGPGLAIFSQWSTNGAGEGGVGGVESGRSGLWGGINTGYPSSSLWGAPQMEER
HQMDSSAGLLPGDLLGGGADSI
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaagaagaaagacgagaaaaagaaaagggaaacctctcagaaggtg
ccagaacagaaaatcaaagtgccagaaccagccaagccctcctgttcccagccgctcgcc
accccaggctcagcgtcccccagccctggccccgtttccccgtcgtcccccagtcctggt
gcaggtgggggttccgcccaagtccctcctggtggcgggaacaatgcaaagcagcgaact
gctgtggccaacggacagccctcctcctccgcctcgtctccttctggaagtcagagttcg
cagcagcagcagcgatacatgtctagagaagtcccaccgcgatttcgctgccagcaggac
cataaagtgctactgaagaggggccagccaccgctgtcctccatgctgttggggggaggg
gaaagcagtacgggagaggtgggaggaggcagttgctgggatgttgccccatccttacag
ggggcagaaggccctaatgcaaacgctgacggaaatacagattccaacgtgggttcatcc
tccccttcacccccaacctcatcctcattttgtgttgctgctctgtcgtcttctactact
acttcaacttatgcaaattccacatggggggccagctccagcggccagtcctcctctcag
ggctgcaggaaggtgtttatggatgggactgacctggatgactggcctagcatcactgct
ggccccaaactgagttctgaaggggccggaggagggatgcaggagcaggactgccctggt
aacaacaacagtagtgcctcatggggggagagaaacatgcagcagaaaggaggaactgca
ggaggaggaggaggaggtgaagggaacatggacaatatttccccacctcgctcttctcct
ctttcttcttcttcctcgcctattgaatgtgctcagccaagtagtgtgtgggtctcctcc
gccgcgtcccaagtggaggtaggccaaggctcggcagcatcttacaattccaaagtctcc
catcttcttcctgggcctcaggagagcccgttgggtggcagcagcagcgtccctggtgcc
aatttcaaccctaatgtgaacccgtctgcctggcccgccctggggcagagcgggacctcc
gttccggcttgtagcgcctcatcgcaacactcgtccgtgacttcagcttcctcattctct
gccagcaccactgtcatcaccactcagacactttcatctgtgaatcaaactggtctctac
cagcagcacactgaaaccgctgtgggggccaagactggagaacagcagcagcagcactta
ggaaatccagggccagagccgtgttcgggtggggcggggagagaagcaggaccaaatcaa
gaaggcgtcaacgagggaaactctgaggttggcggtgaaggtgaggcgaatacttctggg
tctctgtcttcctcctctgctgcctcgtcatcttggagcgctatgcctccggtgacctcc
gaacctggcgctggtgcctcgcaggcagacgggtggggtggagggggtactggagctcag
gggcatgaagggaacgtttggaggtttggtagccaggacgacaaagctgggtggggcaag
gggaatggcggggggtcaaccaacccagttgtatctcagggagcttgggaaggaggaagt
acagaagtgaattggggtggcaccgcagaaagtgtaggttctattaactcagcaatagga
agtggaggagaagtggatggaagcagcatcagcagcagcacggacagcggcggcggcggc
tgtttagaggactctgcctcgcaaaacttagcaactatgacaaaagcttgggacaatcag
aaagggatggaaagtggagacgggacagtcgaggagtggggaggcgcaggagggcagggc
ggagctgtcggaggcggcgggggaaattcgtcgtcgagcggcggtggatccgtcgctgga
agcggaggcggacagaaggagcgctctgtgcggcaccattccgaccattcctccgaggca
gacgtggccttacttagcatgctcaacagatccgacctggacccccgggttctgtccaac
acgggctggggccagactcagatcaagcagaacgtggcctgggacctggacacctcaaaa
ggtgtagggaacagaaacgaaagaaacccttcatcttcctctgcattctcatcagcaacc
ataaacactaccaccatccgcagctctaggtacccatccgagagcggttctgcgtccaat
gatgcgtcgtctggcagcctaaactctggccccgctactcccagggataattgggagggt
ggcactaagcagtccaccagtggtccttttatgcctagcagcaccatgaggaagccagga
tcgccggaagacgacatgcagggcagtcaaggaaaggcagctggaggatggggggaaccc
ccacctgaaaaagagggcaaaggatggaggacggacgaccagcagtggggaggtcacaga
ggaggaaggaaaaactggcaagactatgaacaacagggtagcgggtggggagatggagca
gaagacaaaggaacaggggggtggaagggatctacaagaggagaaacaggtggttgggga
gaggaatggggcaagaaagactcggcttctggagccgggtggggagatgggaggaggaga
gttggaagcaactccgacgagggatcctcctggggaaacatggacgaagggggatctcag
cgaagagggtggggcagtggaggagatgtgggtggaggcaaatcccaccaggactggggg
ggcgccaaacccaacgcagcacagataccaaacagccaagcggcaccaacgaaagcccaa
aatcatcatcatcatcaacaacagcagcagcaatcaccggaggggtttaacagccagccg
aacgtcgggggcggagctcaactttcaaagaaccagaaccaaagtttggggtggaccgct
ggcccaattcctcaaatctccgggggcgcgggggacccgctagagcccagcggctgggag
gaaccgtcgcctcagtccataagccggaagatggagatcgacgacggcacgtcagcctgg
ggggacccaacacgctacaacaacaagaatgtcaacctgtgggacaagaacagcaccgcg
ccggggtcgaaacaaggtccacaatgtccgccgccagcaatgcaacaacagcctccgaga
cggcagcacagcatcaactccaaccctggcagtggagcagtgggcatgtgggggggagct
gcacaaagcgtggatgatggtacaacgacttggagccaggcgtcggacgctgcgaccagc
tggagagaaccggacgattccagcaaatcatctggctggaggaacccttcacccaacccc
agcaaacctggagtgaagtcggtggacagctggggcgggaagggcgacggctccatcgcc
gcatcccggcacccgagctgggaggacgacgaggacggcggcggcggcggagtctggagc
agcgctggttctcagggaagcggctcgtcgtttaactctggaggctggagtcagagtcat
gctgggaagagaggaaacatcaagagtggaggaggcgacagctggatgaatccagtatct
cgccagttttccaacatgggtcttctgggtgatgatccaggcgtggaaaaaaagatggac
ggggacaagagaggaataaatgactacaatggagagatgcgaagaggagggcgaagcgga
ggaggaggaggaggaggagggtaccgcatgcctagttccaaagacatgggccctggtgac
atgggaccctatggtgataagatgggtggccatggagtgtttgctgcaggtggaggaggg
atgtctcagcctcgagggatgcaccagcctggcatgcattcgatgaactcgtccccaggg
ttacgggctcaagtgcctcatcagttcctttctgctcaggtgccgggtcccatgctgaag
cagatgccctctcctggcggcagcgtagggggagtgggaggtgtcggcggtgttggaagt
gtcggcggggttagcggcggagtgttcccgcctcagatttccccgcagcagcttgcagtg
ctcagcaacatttacccccacatgcagcagttccatctggcttgtcagctgctgctacaa
caacagcagcagcagcaacagcaggtcctgcagaaccagaggaagttcccccaacctcag
cctctcagacaacagacagacccgcagcagctggcgaggatcatggcgattctccagcag
aggcagcagcaagttggagctggaggagcaacagctggtggagggaactccaagctgtcc
ccctctcacctgggaggaggcgtgtccaaacaatccatggtagaccccctcccacacact
ggaatggggggtcccttatcagaccttcatgccaaatcacaaggaatgtattctgggctc
acagctggtggcaacctgtcgacactagaactcagccccatgatggggggcatgaaggac
atgagtggacaacagtcccgctttaaatggatgatggagggacattcccctgctccgtct
cctccagacacagcccttcacaagaacggccctgtacccagtacgataaaggttcgagga
gggtctccgtactcccagtatgaaatgctggggagtgaagggttaggaatcccacctcag
ggctctgcagacagctggcaccgaactcctggtagtaaaatgggaaacaaacctgccact
tcaagctggcctccagagttccagcctggtgtaccatggaaaggaatccagagcactgga
gacccagagtccgacccctacatgacccctggtagagtcctcggctccccagcatcccca
aatctcaatgatccggaccacccattactacgagacaatatagggccaaacccctccctc
aacacctcgctgccttcacctggtgcctggccctacagtgcctcagacagccccctcagc
aatgcacacagcacaggaaagtacgccgagtacaagcccagctggcctccagagcccatc
ggacaaaacaaattatggaagaccaatcgcagtagctcgcagctgccgcgtccccctcct
ggcctgaccaatcagaagcaggcctcgccctccccgtggggaactggaggtccgcggttg
gctcggagctggggagggatgaatcaagagtcaagatttgggtcaggctcagcttggagt
gatggtacctctagaagcagctgctggctgctgctgagaaacctgacccctcagattgac
ggctccacgctaaggactatctgtatgcagcacggccccctgctgacctttcacctgggc
ctaacccagggcagcgctctggttcgatacaacagccgtcaggaggcggccaaggctcag
ggtgctcttcacatgtgtgttctgggaaacaccaccatcctggctgagtttgtgagtgaa
gaagaggttgcacgctattttgcacattcccaggccgaaggggccggctcgggaggagcg
gcgggcaacggagcgcccggttcatccggaacgggcgcggccgtggccagcagcggcggg
agctcccctgggagtgagcggccggcggtgggctcatcttcaggtggaaacggaaatggc
gccggcggaggggaaaggtcgtccggctctggatggcagagtctcgacggtacgggcgcg
tcttcggaagcgtcttcggcccaaggaccggggctcgcgatattctcccagtggagcacc
aacggggccggggaaggaggcgtcggcggggtggagagcgggcggtctgggctgtggggc
ggcataaacacaggatacccgagcagcagcctgtggggagcacctcaaatggaggaaagg
caccaaatggacagctccgccggactgttgcctggcgacctgctgggtgggggcgccgac
tccatctga
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