Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00356
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Entry
AMD24_00356 CDS
T04108
Symbol
ddlB
Name
(GenBank) D-alanine--D-alanine ligase B
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii00470
D-Amino acid metabolism
xii00550
Peptidoglycan biosynthesis
xii01100
Metabolic pathways
xii01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
AMD24_00356 (ddlB)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
AMD24_00356 (ddlB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
AMD24_00356 (ddlB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
xii01011
]
AMD24_00356 (ddlB)
Enzymes [BR:
xii01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
AMD24_00356 (ddlB)
Peptidoglycan biosynthesis and degradation proteins [BR:
xii01011
]
Precursor biosynthesis
Amino acid ligase
AMD24_00356 (ddlB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp_4
ATP-grasp_3
RimK
ATPgrasp_ST
GARS_A
Motif
Other DBs
NCBI-ProteinID:
ALJ56537
UniProt:
A0A0P0FYY0
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All DBs
Position
380135..381073
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AA seq
312 aa
AA seq
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MRNYQRLLQVDRSSLKGMHFVVLKGGPGKERAISLQSGASVADALRSRQYYVTEIDVTKD
LDLPKGTDLVFNTIHGTFGEDGCLQDLLEERGVPFTGDGAAGCRLAFDKILAKRRFVRAG
IPTSPFEVLSSGEQPSFAPPFVLKPPCQGSSIGVHVVHNRQQIPLAMENVLKYGDKVLLE
SFFLGRELTVSVVANTVLPIVEIVSTNGVYSYENKYVSGRSEYFAPARLSSDHTAATMDT
ALAAHQALGLQLCSRVDILLSEEGRLNVLEVNTIPGMTPFSLMPRAAAAIGIDLSLLCEI
IAVISLQKWKKA
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgagaaattaccaacgccttttacaagtagaccgctcttccctgaaagggatgcatttt
gttgttctcaagggcggtcctggaaaagagcgggcaatctctctgcaatcgggtgcctcg
gtagcagatgctttgcgctcgcgacagtactatgttaccgagatcgatgtcaccaaagac
ctagacttacctaagggcacagatcttgtttttaatacgattcatggaacatttggggag
gacggttgcttacaggatctccttgaggaaagaggagttccgtttactggagatggagct
gcaggctgccggctggcattcgacaaaatccttgctaaaagacggtttgttagagctgga
atccctacgtctccctttgaggtactgtcttctggagaacagccttcctttgcaccaccc
tttgtacttaagcccccctgccaagggtcttcgatcggcgtacatgtagtgcataaccgg
caacaaatacccttagctatggaaaatgtcctgaaatacggcgacaaggtcctgctagag
tccttttttttaggtagggagcttactgtgagcgttgttgcgaacacggtgcttccaata
gttgagattgtatccacaaatggagtatacagctacgaaaacaaatatgtgtctgggaga
tctgagtatttcgcaccagcacgcctcagcagtgatcataccgcagcaactatggataca
gctctagcagcccatcaagcgcttggattacaactttgctcccgtgtagacattcttctt
agcgaggaaggaagattgaatgtcttggaagtcaacactatccctggcatgacacccttt
agccttatgccacgggcagccgcagcaattgggatcgatttatccttactctgtgagatc
atagctgtaatttccctgcaaaagtggaaaaaagcgtga
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