Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00613
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Entry
AMD24_00613 CDS
T04108
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Pathway
xii03030
DNA replication
xii03430
Mismatch repair
xii03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AMD24_00613
03430 Mismatch repair
AMD24_00613
03440 Homologous recombination
AMD24_00613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xii03032
]
AMD24_00613
03400 DNA repair and recombination proteins [BR:
xii03400
]
AMD24_00613
Enzymes [BR:
xii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AMD24_00613
DNA replication proteins [BR:
xii03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AMD24_00613
DNA repair and recombination proteins [BR:
xii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AMD24_00613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
ALJ56780
UniProt:
A0A0P0FRH3
LinkDB
All DBs
Position
complement(647074..648237)
Genome browser
AA seq
387 aa
AA seq
DB search
MSAALLHRPDGTFYIVTGSDEAAVQLAAADLAERLVPHAHSFAREIIDGATETVGHAVKV
ITSTIQALLTAPLLYENKLVWLKNASMLTDPVLGHSTVLSSALEELQNTLKSGISTGVFF
LLSTPGADRRRSTYKSLTKLAKVIICDNPSSRWHISNADITEWIKKNAAKHHFCFEPAAL
DLFAIRVGESTSQAELELQKLFVSLSSEDGNTITEAVVRELVPATRASSIFDLSNAILTR
NAPLCLEFLRQLILQGEHAIGILLVAIVPTIRNLLIVKALIERHDISPPTHANAFAHLIR
KLPTSVVSHFPRKKDGTLNTYALGLSAIHSARYSQAELRTALKKCLETNRLLINPSPLEE
ATVLTHLLLRIVGKTATNTDYISSAYS
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgcactactccataggccggatgggaccttttatattgtaacaggctcagac
gaagctgcggtccaactcgccgctgcagatttggcagagcgcctggtgccacacgcgcat
tcctttgctagggaaattattgatggtgccacagaaacggttggtcacgcggtaaaggtc
atcacgagtactattcaggctctgctaactgctccactcctatatgaaaacaagttggtt
tggttaaaaaatgcctcgatgctcacggatcccgtgcttgggcattcaacagtccttagc
tctgccctggaagaactgcaaaataccctgaaatcgggcatttctactggtgtcttcttt
cttctaagcacgcctggtgcagataggcgaagatccacttataaatcattaaccaagctg
gcaaaggtaataatttgcgataaccccagctcaagatggcacatctccaatgctgatatc
actgaatggataaaaaaaaatgccgccaagcaccacttttgctttgaacctgctgctcta
gatctctttgcgattcgtgtcggggaaagcacctcccaggctgagttagagcttcaaaaa
cttttcgtctcgttaagttcagaagacggcaataccatcacggaggctgtggtacgagag
ttagttcctgccacgcgtgcgagcagcatctttgacctctccaatgcgatcttgacccga
aatgcgcccctttgcttagagttcctccgacaacttatcctccagggcgagcatgccata
ggcatccttttagtagctatagttcctaccatacgtaacctcctcatcgttaaagctctc
atagaacgccatgatatctctccacccacacatgcgaacgcctttgctcacttaattaga
aaacttcccactagcgtagtttctcattttccaagaaaaaaggacggcactctaaacaca
tacgcccttgggctttccgcaatacactccgccagatactcgcaagcggaactgagaact
gccctaaagaaatgtctagaaacaaatcgattgctcatcaatccttctccactggaagaa
gcgacagttctcacgcatctccttttgcgtattgtagggaagacagcaacgaataccgac
tatatctcctctgcttattcttaa
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