Xenopus laevis (African clawed frog): 108717395
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Entry
108717395 CDS
T01010
Symbol
sptbn1.S
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108717395 (sptbn1.S)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xla04812
]
108717395 (sptbn1.S)
Cytoskeleton proteins [BR:
xla04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
108717395 (sptbn1.S)
Intermediate filaments
Intermediate filament-binding proteins
108717395 (sptbn1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
PH_11
Motif
Other DBs
NCBI-GeneID:
108717395
NCBI-ProteinID:
XP_041420258
Xenbase:
XB-GENE-6486262
UniProt:
A0A8J1KVI9
LinkDB
All DBs
Position
5S:25063933..25185563
Genome browser
AA seq
2356 aa
AA seq
DB search
MTAVATDYDNIDIQQQYTDVNNRWDDEWDNENSSARLFERSRIKALADEREAVQKKTFTK
WVNSHLSRVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQF
LKEQRVHLENMGSHDIVDGNHRLILGLIWTIILRFQIQDISVETEDNKEKKSAKDALLLW
CQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAE
QHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKMKALAVEGKRIGKVLDNAIETEK
MIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKGNL
EVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRNELIRQEKLEQ
LARRFDRKAAMRETWLSENQRLVSQDNFGFDLPAVEAATKKHEAIETDIAAYEERVLAVV
AVARELEAENYHDIKRITARKDNVIRLWEYLLELLRARRQRLEMNLGLQKVFQEMLYIMD
WMDEMKVMLLSQDYGKHLLGVEDLLQKHALVEADIAIQADRVRAVNASAQKFATGGEGYT
PCDPQVIRDRVAHMEFCYQELCQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQILS
SDDYGKDLTSVIRLYSKHKAFEDEMSGRSGHLLQTIKEGDEMIAEDHFGSEKISERIKDI
QEQWANLEQLSAIRKKRLEDTSSFYQFQADADDVDAWMLDILRIVSSSDVGHDEYSTQSL
VKKHKDVAEEIASYRSTIDALHEQAAALPEERFNSTDVQNRLSGIEERYKELAELAKLRK
QALQDALTLYKMFSEADACELWIVEKEQWLNNVQIPEKLEDLEVIQHRFESLEPEMNNQA
SRVAVVNQIARQLIHSGHPSEKEIKAQQDKLNTRWSQFRELVDRTKDALNSALSIQNYHL
ECNETKSWIREKTKVIESTQELGNDLAGVMALQRKLTGMERDLAAIEAKLTDLQKEAEKL
EAEHPDQAQAIMDRLAEINNVWEEMKTTLKNREESLGEASKLQQFLRDLDDFQSWLSRTQ
TAIASEDMPNTMAEAEKLLTQHENIKNEIDNYEEDYQKMRDMGEVVTQGQTDAQYMFLHQ
RLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAEAFLNNQEYVLAHTEMPNNLE
AAEAAIKKQEDFMTTMDASEEKINAVVDTGRRLVKDENINSDKIEEKVDSIDNRHKKNRA
AANDLLMRLKDNREMQKFLQDCQELSLWINEKMLTARDMSYDEARNLHSKWLKHQAFMAE
LASNKEWLDKIEKEGNQLIAEKPETEAIVREKMSVLHEMWEELETTTQTKAQRLFDANKA
ELLTQSCADLDKWLHGLESQIQSDDYGKDLTSVNILLKKQQMLENQMDVRKKEVEELRSQ
AQALSQEGKSTDEVDGQRQVVEVRFVELLAPLNERKKYLLASKEIHQFNRDVEDEILWVV
ERMPLATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQHRNDDIFERSKLILEDGSFNAEAI
TQRLTDLQALWNQLIEETEKRHRRLEEAHRAQQYYFDGAEAEAWMSEQELYMMSEEKAKD
EQSAVSMLKKHQILEQAVEDYAETVHQLSKTSRALVAEGHPESERISMRQSQVDKLYAGL
KDLSEERRGKLDERQRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFREF
ARDTGHIGQERVDSVNHMADDLINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAA
SYELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQL
QEDAARLQAAYAGDKADDIQKRESEVLEAWKTLLDACDGRRLRLVETGDKFRFFSMVRDL
MLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKHY
ASEEIKEKLLQLTEKRKEMIDKWEDRWEWLRLILEVHQFSRDASVAEAWLLGQEPYLSSR
EIGQSVDEVEKLIKRHEAFEKSAATWDERFSALERLTTMELLEVRRLQEEEERKRKPPTP
ELSPKLSEDGSPQQWDGTKDGEQISQNGLPSDQESPRMVENADTNEMVNGSTEQRSSSKE
SSPIPSPTADRKSKSGMQPQTAATLPAKTQEIPSAQFEGFLHRKHEWEGHNKKASSRSWH
NVYCVINNQEISFYKDSKNAASGIAYHNEVSVNVKEAVCEVATDYKKKKHVFKLKLNDGN
EYLFQAKDDEDMNTWIQAITNAMMSDKSEVSVSTQSTPASSRAQTLPASVTDSPGKREKD
KEKDKEKRFSLFGKKK
NT seq
7071 nt
NT seq
+upstream
nt +downstream
nt
atgacggccgtcgcaacagactacgacaacatcgacatacaacagcagtacaccgatgtc
aacaatcgctgggatgatgagtgggacaatgagaacagctctgcccgcctgtttgagaga
tcccgcatcaaggccttagcagatgagcgtgaagccgtgcagaagaagactttcacaaaa
tgggttaattcccacttatcccgggtgtcgtgccgaattactgatctctacacagacctt
cgagatgggaggatgcttatcaaactactggaggttctctccggagaaagactccccaaa
cccaccaagggcagaatgcgcatccactgcctggaaaacgttgataaagctctccagttc
ctaaaggaacagcgggtgcacctggagaacatgggctcccatgatattgtggatggaaat
cacaggctgatccttggtcttatttggaccattattctccgattccagatccaagatatt
agcgtggaaactgaggacaacaaagagaagaaatctgctaaggacgcgctgcttctttgg
tgccagatgaagacagctggctatccgaatgtgaacatccataactttacaactagctgg
agggacggcatggcattcaatgcacttattcacaaacacaggcctgatctaattgatttt
gataagctgaagaaatcaaacgcacactacaatcttcaaaatgcttttaacctggcagag
cagcaccttggccttacaaagcttctggaccctgaggatatcagcgtggatcatcctgat
gaaaagtctatcattacctacgttgtaacatattaccactacttctccaaaatgaaagct
ctcgctgtggagggcaaacgtataggaaaagtgctggacaacgccattgaaacagagaaa
atgattgaaaaatacgaatctctggcctccgacctcctggagtggattgagcagaccatc
atcatcctgaacaatcggaaatttgccaattctttggttggtgtacagcagcagttgcag
gcgttcaatacttaccgtactgtggagaaaccccccaaatttacagagaaaggaaatttg
gaagtcttgcttttcaccatccagagtaaaatgagggcgaataaccagaaagtgtacatg
ccaagagagggcaaactcatctcagatattaacaaggcctgggaaagactggaaaaagcc
gaacacgagcgagagttggcactgcgcaatgagctcattcgacaggagaaactggaacaa
cttgcacggcgatttgatcgcaaggcagctatgagagaaacctggctcagtgaaaaccag
cgcttggtgtcccaggataattttggttttgacctccccgctgtggaagcagctacaaag
aagcacgaggccattgaaacagacattgcagcctatgaagagcgtgtgttggctgtggtg
gcagtcgctagggaactggaagcggaaaactaccatgatatcaagcgcatcaccgccaga
aaggataatgtcattcgactgtgggagtatcttcttgagcttctcagggctcgacgacag
cgccttgaaatgaacctcggcttgcaaaaggttttccaggaaatgctctacataatggac
tggatggatgaaatgaaggttatgttattgtctcaagattatgggaaacatttgctgggg
gttgaggacctgttgcagaaacatgccttggtggaggctgacattgccattcaagcagac
cgggtcagagctgtcaatgcttctgctcagaaatttgccactggaggagaaggttataca
ccatgcgaccctcaagttattcgggatcgtgtggcccacatggagttctgttaccaggag
ttgtgtcagctagctgcagagaggcgggctcgtctagaggagtctaggcgcctctggaag
tttttctgggaaatggcagaagaagagggatggattcgtgaaaaggaacagattctgtcc
tctgatgactatggaaaggacttgacaagtgttattcgtctgtatagcaagcataaagct
tttgaggatgagatgagcggtcgaagtggacacttacttcaaacaattaaagagggtgac
gagatgattgctgaagaccatttcggttctgagaaaatatcagagagaattaaggatatt
caggagcagtgggcaaatctggaacagttgtctgcaatcagaaagaaacgtctggaagat
acatccagtttctatcagttccaggcagatgctgatgacgttgatgcatggatgttagac
atcctgaggattgtatctagtagtgacgtggggcatgatgaatattctacacagtccttg
gttaaaaagcacaaggatgttgctgaagaaattgcaagttaccgatcaactattgatgct
ctccatgagcaggctgctgccctccccgaggagcgatttaattccacagatgtgcagaac
agattgtcaggcattgaagagagatataaagaattggctgagctggcaaagcttcgaaaa
caggctctgcaagatgcccttacgctctacaaaatgtttagtgaagctgatgcctgcgag
ctctggattgtcgagaaggagcaatggctaaataacgtgcaaatccctgaaaaactagaa
gatcttgaagttattcaacacagatttgaaagcttggaaccagaaatgaacaaccaagct
tctcgggtggctgtggtgaaccaaattgctcgtcagcttatccatagtggtcacccaagt
gagaaggaaatcaaagcacagcaggataaactgaacacaagatggagtcagtttagagag
ctggtagacagaacaaaggatgcacttaactcagcactcagcattcaaaactatcacctt
gagtgcaatgagacaaagtcctggattagagaaaagaccaaagtcattgagtctacacaa
gaacttggtaatgacctggccggcgttatggctctgcagaggaaattaactggcatggaa
cgtgatctggctgccattgaggcgaaactgactgatctccagaaagaggcagaaaaactg
gaagctgagcatcctgaccaagctcaggcaataatggacagacttgctgaaattaacaac
gtgtgggaagaaatgaaaacaacactaaagaatcgagaagagtctcttggtgaagccagc
aagctgcagcagttcttgcgtgacttagatgacttccagtcttggctttccaggacccag
actgctattgcatcagaggacatgccaaacacaatggcagaggccgaaaagcttcttact
cagcatgaaaacatcaagaatgaaatcgacaactatgaggaagactaccagaagatgagg
gatatgggtgaggtggtgacacagggacaaacagatgcacagtacatgttcttgcaccaa
cgccttcaggctcttgacaccggatggaatgagcttcacaagatgtgggaaaacagacag
aacctcctttctcagtctcatgcttatcagcttttcctaagagatacaaagcaagctgaa
gcatttctcaataaccaggaatatgtcttggcacatacagaaatgcccaataacttggaa
gctgcagaggcggctatcaagaagcaggaagatttcatgactactatggatgctagtgag
gagaagatcaatgcagtggtggacactggaagaaggctggtcaaagatgaaaacattaat
tctgataagattgaagagaaggtggattcaatagataacaggcacaagaagaatcgcgca
gcagctaatgatctattaatgcgcctgaaagacaacagggagatgcagaagttccttcag
gactgccaagagctgtccttgtggattaatgagaagatgctcacagctcgcgatatgtct
tacgatgaggcccgaaacctgcacagtaagtggctgaaacaccaagctttcatggctgaa
ttggcatccaataaggagtggctggacaaaatagaaaaggagggaaaccagctcattgca
gagaaaccagaaacagaagctattgtaagagagaagatgagcgttttgcatgaaatgtgg
gaagagcttgaaaccaccacacagaccaaagcgcagcgtctttttgatgccaacaaagct
gagcttttaacccagagctgtgcggatctggataagtggctgcacggcctggagagtcag
attcagtcggatgattatgggaaagatctgaccagcgtgaacattcttctgaagaaacaa
cagatgctggagaaccagatggatgtgcggaagaaggaggtagaagagctgcggagccaa
gcccaggcgctgagccaggaggggaagagtacggatgaagtggatggccagcggcaggtt
gtggaagtgaggtttgtggaactgctcgcacccctgaatgaaaggaaaaagtacctgttg
gcttccaaggagatccatcagttcaaccgggatgtggaagacgagattctttgggtcgta
gagagaatgccgcttgccacgtccacagaccatgggcacaatcttcagactgtgcagctg
ctgataaagaaaaaccagactcttcagaaggagatccaggggcaccagcaccgcaatgac
gacatatttgagaggagcaagttaatcctagaagacggcagctttaatgcagaagcaatt
acacaaaggctgacggacttgcaggcactatggaaccagttaatagaagagacagaaaag
cggcacaggaggctggaggaggcgcacagggcacagcaatattattttgatggcgcagag
gctgaagcctggatgagtgagcaagagctgtatatgatgtccgaggagaaggccaaggat
gagcagagcgcagtgtctatgttgaaaaagcaccagattcttgagcaagccgttgaagat
tatgcagagactgtgcaccagctttccaaaaccagcagggcattggtggcagaaggtcac
ccagagagcgagcgtatcagcatgcgtcagtctcaggttgataaactttatgccggactc
aaagatctgtcggaagagaggagaggcaaactggatgagaggcaacggctgttccagctc
aatcgggaagttgatgacctggagcagtggattgctgaaagagaggtggtagcgggatct
cacgagcttggccaagactatgaacatgtaacgatgttacaagagcggtttagagaattt
gcccgggacactggacatatcggacaggagagagtagactccgtcaaccacatggcagat
gatctcattaattctggccattccgacgcagccacaattgcagaatggaaagacggcctc
aacgaggcatgggctgaccttctggagcttatcgacacaagaacgcagatactggcagcc
tcttatgaactgcacaaattctaccacgatgctaaagagatctttggccgcatacaagat
aaacacaagaagctcccagaggagctgggcagagatcagaacacagtagagacactacag
aggatgcatacaacgtttgaacacgacattcaggcactggggacacaggttaggcaactt
caggaagatgctgcccgactgcaggctgcttatgccggcgacaaagcagatgatatccag
aagagagagagtgaggttttggaggcatggaaaacgttactggatgcatgtgatggacga
aggctccgactcgtagaaacaggggacaagttccgcttcttcagcatggtgcgtgatcta
atgttatggatggaagatgtgatccgacagatcgaggcccaagagaagccaagggatgtg
tcctcagtagaattgctgatgaataatcaccagggcataaaagcggagattgatgcccgg
aatgacagctttactacatgtattgagcttggcaagtccctcttggcaagaaagcattat
gcatcagaagagattaaggagaaactgctgcagctgactgagaagagaaaagagatgatt
gacaagtgggaagaccgatgggaatggctgcgactcattctggaggtgcaccagttttcc
agagatgccagcgttgcggaggcctggctgttgggacaagagccatacctgtcaagtcgg
gaaataggccagagtgtcgatgaagtggaaaaactaattaagaggcatgaagcgtttgag
aaatcggcagctacttgggatgaaaggttttctgctctggaaaggcttactacgatggaa
ctgttggaagtacggcggttgcaagaggaagaggagaggaaaaggaagcctccgactccc
gagctaagtccaaagctttcagaagatggatccccacagcaatgggatggaacaaaagat
ggagaacaaatatctcagaacggattgccttctgaccaggagtcgccacggatggtggag
aatgcggacaccaatgaaatggttaacgggtccacagagcagagatcaagctccaaagaa
tccagtccaattccttcaccgactgccgatcggaaatccaaatccggcatgcagccgcag
actgccgccaccctcccggctaagacgcaggaaatcccttctgcgcaattcgaaggtttc
ttgcatcgcaaacatgaatgggagggtcacaacaagaaagcttcaagcagatcttggcac
aatgtgtactgtgtgatcaacaaccaggaaatatcattttataaggattccaaaaacgct
gcatcgggtattgcgtatcacaacgaggtctctgtgaatgtgaaggaagccgtctgtgaa
gtggcaactgactacaagaagaagaaacacgtattcaaattaaagcttaacgatggcaac
gagtatctgttccaagccaaagatgatgaggacatgaacacgtggattcaggccatcaca
aacgcaatgatgtcggataaaagtgaggtgtcggtgagcacccagagcaccccagcatcc
agccgcgcccagaccctcccggccagcgtaaccgacagcccagggaagcgggaaaaagat
aaagaaaaggacaaagaaaagagattcagcctctttggcaaaaagaagtga
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integrated database retrieval system
