Xenopus laevis (African clawed frog): 108719213
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Entry
108719213 CDS
T01010
Symbol
colec12.L
Name
(RefSeq) collectin-12
KO
K10062
collectin sub-family member 12
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108719213 (colec12.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xla04131
]
108719213 (colec12.L)
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
xla04091
]
108719213 (colec12.L)
Membrane trafficking [BR:
xla04131
]
Endocytosis
Phagocytosis
Opsonins
108719213 (colec12.L)
Lectins [BR:
xla04091
]
C-Type lectins
Group 2: Type II membrane receptors (Asialoglycprotien and DC receptors)
Scavenger receptor with a CTLD (SRCL)
108719213 (colec12.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Lectin_C
Filament
Alpha-2-MRAP_C
Crescentin
CHD1-like_C
DUF1664
DUF3450
PEP-utilisers_N
ATG17_like
Fib_alpha
Cluap1
Motif
Other DBs
NCBI-GeneID:
108719213
NCBI-ProteinID:
XP_018123416
Xenbase:
XB-GENE-17334805
UniProt:
A0A974CPM6
A0A1L8FYM3
LinkDB
All DBs
Position
6L:115112533..115199466
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AA seq
748 aa
AA seq
DB search
MKDDFAEEEEVQSFGYKRFGIQEGTQCTKCKNNWALKFSIILLYVLCALLTITVSILGYK
VVERMDGVTDDMEMSHRGYSKQLTDVEVNLKKLDDQAGLKSVSTNSELSSVRSDIATIRQ
QLREITEKTTRNKDTLEKLQEAGDLLDAKQSQMKTVLDSNSLMINGLNHTLLAYNTYVSS
LQQDTNSLQTSLQNQMQLSSMIIMNISNLNVTQIQQRTAISALQRSVDDTSQAIQKIKND
FQSLQQAVLQTRKDTEWLKDRVQNLQNIAANNTAFVKANNETLEDMSSQLNTLGTQIDNV
TVIAQSNEQSLKDLQDYHKQYENRTNSKINHLEERFQKFEVDIVSIISNISYTALHLRTL
TSNLNDVRTSCTEILSKHTDDLVNLNNSLGNMQIDTTSLRMQQDFMRMRLDNEVGNLSII
MEEMKVVDSKHGQLIKNFTILQGPPGPRGPKGERGSPGFSGPIGPKGQTGEKGEPGPPGP
VGEKGPPGPIGPPGDKGSKGSRGSQGNKGQRGSPGKSGETGPKGEPGPQGPPGNNGIPGP
SGPPGPQGEKGVNGEPGAPGIRGSPGPPGIPGLRGFPGPRGPPGPPADLGSSLAFNQSPS
AEVMLEPVVTGCPLAWKNFSENCYYFSTGKDIFDDAKLICEEKAAMLVVIETQAEQQFLK
KQTTGSGNFWIGLTDTEEEGTWKWLDGTIPNYKNWKEGQPDNWSHQTGPGEDCAGLIYSG
LWNDFHCQDYNNFICEKPMDKTQLPDVS
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacgactttgcagaagaagaggaggtacagtcatttggatacaagaggtttggt
atacaggaaggaacacaatgtacaaagtgtaaaaataactgggcactgaagttttctatc
atattgctgtatgttctgtgtgcgctgctaacgatcacagtctctatactgggatacaaa
gttgtagaaaggatggatggggtgacggatgacatggaaatgtcacacaggggctactca
aagcaacttactgacgtggaagtgaatttgaagaaattagatgatcaagcgggattaaaa
tcagtctctaccaatagcgagctttcaagtgttaggtcagacattgccaccatccgccag
caactgcgggaaatcacagagaaaacaacgcgaaacaaagacactttagaaaagttgcag
gaagctggagatttactagatgcaaagcaaagccaaatgaaaactgtgctggacagcaac
tccttaatgatcaatggtctaaatcacaccttactggcatataatacctatgtctccagt
ttacagcaggatacaaacagtctacagacaagcctgcaaaaccaaatgcagttaagcagt
atgatcataatgaatatcagtaacctaaatgttacacagattcaacagaggactgccata
agtgctttgcagagatctgttgacgatacaagccaagctattcaaaagatcaagaatgat
tttcaaagtttgcagcaagccgtcctccagacccggaaagacaccgaatggctcaaagac
agggtgcaaaacctgcagaatattgctgcaaataatacagcttttgtgaaagccaacaac
gagactctggaagacatgagcagtcaactaaatacccttggaacacaaattgacaatgtc
actgtgattgcacaaagtaatgagcaaagtctcaaggaccttcaggattaccataaacag
tatgaaaacagaaccaattccaagattaaccatttagaggagcgttttcagaaatttgaa
gtagatatagttagcattattagcaacattagctacactgctctacatctaaggacgctg
actagcaacctcaatgatgttaggacaagctgcactgaaatactgagtaagcatacggat
gatctggttaatctaaacaactcactaggcaacatgcagatagacacgacttctctaagg
atgcagcaagatttcatgagaatgagattagataatgaagttggcaatttatcgattatt
atggaagaaatgaaagtagtggattcaaagcacggacaacttatcaagaacttcaccatc
ttacaaggacctccaggtccaagaggacctaaaggtgaaagagggtctccaggattttca
gggccaattggaccaaaaggacagacaggagaaaaaggagaaccaggaccacctggtcct
gtaggtgaaaaagggccacctggacccattggccctccaggagacaagggttcaaagggc
tcaagaggttcacaaggcaacaaaggacagagagggtctccaggaaaatctggtgaaact
ggaccaaaaggagaaccagggcctcaaggaccacctggaaataatggaatacctggacct
tctggtccaccaggtccacagggggaaaaaggagtcaatggggaacctggagctccagga
attagagggtcacctggacctccaggaatacctggattacgtggattccctggacctaga
ggtcctccagggcctcctgcagatttgggaagttctttagcatttaatcagtctccttca
gcagaagttatgcttgaaccggtggtgactggttgtcctctggcgtggaagaacttttct
gaaaattgttactacttctcaactggaaaagatatatttgatgatgccaaactgatctgt
gaagaaaaggcagctatgttagttgtgattgaaacccaagcagaacaacaatttttgaaa
aaacaaacaactggaagtggaaacttctggataggtctcacagatactgaggaagaaggt
acatggaaatggctggatggtactattccaaactacaaaaactggaaggaaggacaaccc
gacaattggtctcatcaaactggaccaggagaagattgcgctggcttaatatattcaggg
ttgtggaatgactttcactgtcaagactacaataatttcatttgtgagaaacccatggat
aaaactcagttacctgacgtctcatag
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integrated database retrieval system
