Xenopus laevis (African clawed frog): 397978 Help Entry 397978            CDS       T01010                                  Symbol lig1.L, lig1, lig1.S, ligI Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism xla  Xenopus laevis (African clawed frog) Pathway xla03030   DNA replication xla03410   Base excision repair xla03420   Nucleotide excision repair xla03430   Mismatch repair Brite KEGG Orthology (KO) [BR:xla00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     397978 (lig1.L)    03410 Base excision repair     397978 (lig1.L)    03420 Nucleotide excision repair     397978 (lig1.L)    03430 Mismatch repair     397978 (lig1.L)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:xla03032]     397978 (lig1.L)    03400 DNA repair and recombination proteins [BR:xla03400]     397978 (lig1.L) Enzymes [BR:xla01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      397978 (lig1.L)     6.5.1.6  DNA ligase (ATP or NAD+)      397978 (lig1.L)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      397978 (lig1.L) DNA replication proteins [BR:xla03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     397978 (lig1.L)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      397978 (lig1.L) DNA repair and recombination proteins [BR:xla03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      397978 (lig1.L)    NER (nucleotide excision repair)     Other NER factors      397978 (lig1.L)    MMR (mismatch excision repair)     Other MMR factors      397978 (lig1.L) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme DDR Motif Other DBs NCBI-GeneID:  397978 NCBI-ProteinID:  NP_001081653 Xenbase:  XB-GENE-1009783 UniProt:  P51892 LinkDB All DBs Position 7L:108468678..108506501 Genome browser AA seq 1070 aa AA seqDB search MQRTIKSFFQPKLGAEVKTKEEKVKNDVQKEKEEPEKSVPERPLKERNGRALCGDTESPV KRVSKKSARVLESDSEEEEENSKVQATPEKMNNESDPKNDVKETPPSARKETPPSARKET PPSARKETPQSARKETPPSARKDAKSEGASEMNTSQDFVSPCSSKSIDSPLCSDSPGISP SGIPKRKTARKQLPKRKLEISPSESNPPKDDFDVKGAVKRQKKEAEGDIQQEEPMETSHN ISMEEECPIKKETNPDVVQETISNADDPNIELVDQKDVVSGEKQSEPKCQEQPQPKLTSP TVEPKASKGKARKKNSPLPKKVKFSDKVSFKDNDSEEKSNEEKSDEEPQKKADSAKPVKQ ISSFFAPRKPAIKTEKREENLNEKNVTETSLEESPKPKKNVGSFFGASKQEATEEQTEYN PSKSKYHPIDDACWCNGQKVPYLAVARTFERIEEESARLKNVETLSNFLRSVIALTPEDL LPCIYLCLNRLGPAYEGLELGIGETILMKAVAQATGRQLEKIKAEAQEKGDLGLVAESSR SNQRTMFTPPKLMASGVFGKLKDIARMTGNASMNKKIDIIKGLFVACRHSEARYIARSLG GKLRIGLAEQSVLSSIAQAVCLTPPGRDAPPTVMDAGKGMSADARKSWIEEKAMILKQTF CELPNYDAIIPILLEHGIDDLPKHCRLTPGIPLKPMLAHPTKGIGEVLKRFDEAAFTCEY KYDGERAQIHILENGEVHVYSRNQENNTTKYPDIISRIPKIKKESVKSCILDTEAVAGDA EKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDMLYLNGESLVKEPFAKRRQLLRDSFL ETEGQFMFATYMDKSNTDEISEFLDQSIKDSCEGLMVKTLEQDATYEIAKRSHNWLKLKK DYLEGVGDTLDLVVIGAYLGKGKRTGIYGGFLLASYDEESEEYQTICKIGTGFTDDDLEK HYNFLKDHVIENPRSYYRWDSATEPDHWFDPVQVWEVKCADLSISPVHKAALGLVEDQKG ISLRFPRFLRIRDDKKPEESTNSFQVADLYRKQQQIQNTSSTEKAEEDFY NT seq 3213 nt NT seq  +upstreamnt  +downstreamnt atgcaacgaacaataaagtccttttttcagcccaagctaggggctgaagtaaagactaaa gaagagaaagtgaagaatgatgttcaaaaggaaaaagaagagccagagaaaagtgttcct gaacgtcctttaaaagagagaaatggcagagctttatgtggagataccgagtcaccagtc aaacgagtttcaaagaagtctgcacgtgtgttggaaagtgatagtgaagaggaagaggag aattcaaaggtacaagcgactcctgaaaaaatgaacaatgaaagcgatccaaagaatgat gttaaagaaactcctccgagtgcacgtaaagaaactcctccgagtgcacgtaaagaaact cctccgagtgcacgtaaagaaactcctcagagtgcacgtaaagaaactcctccgagtgca cgtaaggacgcaaaatctgaaggagcttcagagatgaacacttcccaagattttgtctct ccttgcagcagcaaatctattgacagccctttatgttcagattctcctggcatatctcct tccggtatccccaaacgaaagacagcccgtaaacagctaccaaagcgtaaactggaaata tctcccagtgaatcaaatccaccaaaagatgattttgatgtcaaaggagcagtgaagcga caaaagaaagaggcagagggagatattcaacaagaagaacccatggagacaagtcacaat atctccatggaagaggaatgccccataaagaaagagacaaatcccgacgttgttcaagaa accatatccaacgcggatgatccaaacatagaacttgtagaccaaaaggatgttgtttca ggagaaaagcaatctgagcctaaatgtcaagagcaaccacagcccaaacttaccagtcct actgtggagcctaaagcttcaaaagggaaggcaagaaagaaaaacagtcctctgccaaag aaagtgaaatttagcgataaagtttcttttaaagacaatgacagtgaggaaaaaagtaat gaggaaaaaagcgacgaggagcctcagaagaaagcagattctgctaaacctgtgaaacaa ataagcagtttctttgccccaaggaaacctgcaataaagactgaaaagagagaggaaaat ctgaatgaaaagaatgtcactgagacctctttagaagaatcccctaagcctaaaaaaaac gttggcagtttctttggagcatccaagcaagaagcaacagaagaacagacagagtataac ccatccaagagtaaatatcaccccatagatgatgcttgctggtgtaatggacagaaggta ccttatcttgctgttgcacgaacttttgaaaggatagaagaggaatctgcccgactgaag aacgtagagactctgagtaattttctgcgctccgtcattgctcttactcctgaggatctc ttgccttgcatctatctttgtctgaaccgcctgggaccggcatatgaaggactggagcta ggcataggagaaactattctaatgaaagcagttgcccaggctacaggacgccagcttgag aagataaaggctgaggcacaagagaaaggagaccttggcctggttgctgagagcagtcgt agcaaccaacgcacaatgtttacacccccaaagctcatggcatcaggtgttttcggcaag ctgaaagatatagccaggatgactggcaatgcttctatgaataagaaaattgacattatt aaaggactgtttgtagcctgcaggcattctgaggcacgttatattgccagatctcttgga ggaaaacttagaattggtcttgcagaacagtcagtgttatcatccattgctcaggcagtg tgccttactcctcctgggcgagatgcccctcctactgtgatggatgccggaaagggaatg agtgcagatgccaggaaatcctggattgaggagaaagcaatgatcttgaaacaaactttt tgtgagttgccaaactatgatgccataattcctattcttttggaacatggtattgatgac ctcccaaaacactgccgacttactccaggtatccctctgaaaccaatgttggcgcatcct accaagggtattggggaagtgttgaagcgatttgatgaagctgcctttacttgtgaatac aaatatgacggggagcgtgcacagatacatattctggaaaatggggaagtacatgtatac agcagaaaccaagaaaacaacaccacaaaataccctgacatcatcagcagaattcctaag attaaaaaagaaagcgtcaaatcctgtatcctcgatacggaagctgtagccggggatgca gaaaagaaacaaattcagccatttcaagtactgactactagaaagagaaaggatgtggat gcatcagagattaaagtgcaagtttgtgtgtatgcctttgacatgctttaccttaatgga gagtccctagtgaaggagccatttgctaagcgacgacagctcttgagagactcgttcctg gagactgaagggcagttcatgtttgctacatatatggataagtcaaatacagatgaaatt tctgagtttcttgatcagtctattaaagattcatgtgaaggacttatggtgaagacactg gagcaagacgctacatatgaaattgcaaagagatctcacaattggttaaaattaaagaag gattacttggaaggtgtgggtgatactctggatcttgttgttattggagcttaccttggg aaagggaaaagaactggtatctatggaggcttcttacttgcgtcatacgacgaagaaagt gaggaatatcagaccatctgcaagattggaacaggttttacagatgacgacttagaaaag cattacaacttcctgaaggatcatgtgattgaaaatccacggagctactaccgctgggac agtgccacagagccagatcactggtttgatcctgtacaagtctgggaagttaagtgtgct gatctatccatttctccagtacataaggcagctcttggattggtggaggaccagaaagga atttctctgcgatttcctcgttttcttcgtatcagagacgataagaaaccagaggaatcc acaaacagttttcaggttgcagatctttatagaaagcagcagcaaatccaaaacacaagt tcaacagagaaggcagaggaggatttttactag

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