Xenopus laevis (African clawed frog): 399336
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Entry
399336 CDS
T01010
Symbol
sf3b1.S, hsh155, prp10, prpf10, sap155, sf3b1
Name
(RefSeq) splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
399336 (sf3b1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
399336 (sf3b1.S)
03036 Chromosome and associated proteins [BR:
xla03036
]
399336 (sf3b1.S)
Spliceosome [BR:
xla03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
399336 (sf3b1.S)
Complex B
399336 (sf3b1.S)
Complex C
U2 SnRNP specific factors
399336 (sf3b1.S)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
399336 (sf3b1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
HEAT_EZ
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
Motif
Other DBs
NCBI-GeneID:
399336
NCBI-ProteinID:
NP_001084150
Xenbase:
XB-GENE-959871
UniProt:
O57683
A0A974BVA4
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All DBs
Position
9_10S:82780277..82810748
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AA seq
1307 aa
AA seq
DB search
MAKVAKTHEDIEAQIREIQGKKAALDEEEGVGLDSTGYFDQEIYGGSDSRFTGYVTSIAA
NEQEDDDDDVSSATFEQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIANREDEYKQQ
RRKMIISPERLDPFADGGKTPDPKLNARTFKDVMQEQYLTKEEREIRQQIAEKAKSGDLK
VVNGSSASSAAQPPSKRKRRWDQTGDQTPGSTPKKLSSWDQAEVTPGHTPSSLRWDETPG
RAKGNETPGATPGSKIWDPTPSHTPAGVATPGRGDTPGHVTPGHSGATSSARKNRWDETP
KTERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGK
TPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPP
PAGYVPIRTPARKLTATPTPLGGLTGFHMPTEDRSMKSVSDQPSGNLPFLKPDDIQYFDK
LLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILP
LLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREII
SNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKS
WQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAAT
PYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREF
QSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTT
VELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGIL
YAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISR
TAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLL
PRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRAT
VNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR
VPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSL
GVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMVQYCLQGLFHP
ARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYTL
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagttgcgaaaacacacgaagatattgaagcacaaatacgtgaaattcaaggg
aagaaggcagccctcgatgaggaagaaggagttggacttgattctactggatattttgat
caagaaatttatggtggaagtgatagcagatttactggatatgtcacatctatcgcagca
aatgaacaagaagatgacgatgatgatgtttcttcagcaacttttgaacagaagaaacca
ggttatcacgctccagttgcattattaaatgatatccctcagtccactgaacagtatgat
ccgtttgcagaacacagaccgcagaagattgcaaaccgtgaagatgagtataaacagcag
agaagaaagatgattatttctcctgaaaggcttgatccttttgcagatggtggaaaaaca
ccagatcctaaattaaatgcaagaaccttcaaagatgttatgcaagaacaatatttaaca
aaggaagagcgtgaaatacgacaacaaatagcagaaaaggctaaatctggagatcttaaa
gtggttaatggatcatctgcatcgtctgcagcacagccaccttctaaacgcaaacgtaga
tgggatcagacaggggatcaaacgcctggttctactccaaagaaactatcgagctgggat
caagcggaggtcactcctggacacacaccttcttcattaagatgggatgaaacgccaggg
cgtgcaaaaggaaatgaaactcctggagcaacaccaggttcaaaaatttgggatcctaca
cctagtcatactccagctggagttgctacacctggcagaggggatactccgggtcatgta
acaccaggtcacagtggtgcaacatcgagtgcaagaaaaaatagatgggatgagactccc
aaaacagaacgtgatactcctggtcatggcagtggatgggccgaaacacctcgcacagat
cgtggaggagattctattggagaaactccaactcctggagccagtaaaagaaaatcccgc
tgggatgaaacccctgctagtcagatgggtggtagtactccagttttgacgccaggaaaa
actccaattggcactcctgctatgaacatggcaactccgacaccaggacacattatgagc
atgacaccagaacagcttcaggcttggagatgggagcgagaaattgatgaaagaaaccgt
cctttgtctgatgaagaattggatgctatgtttccagaaggttataaggtccttcctcct
cctgctggatatgtaccgattcgtacacctgcccgtaaattaactgcaactccaacacca
ttgggaggtttgactgggttccatatgccaacagaggatagatccatgaaaagtgttagt
gaccaaccttctggaaatcttccattcctgaaacctgatgatattcagtactttgacaaa
ttattggttgatgttgatgaatctacactaagtccagaagaacagaaagaaagaaaaata
atgaaattattgttaaaaataaaaaatggcacacctccaatgaggaaggctgccttacga
caaataactgataaagctcgtgagtttggagccggtccactattcaatcagatcctgcct
ctgttgatgtcgccaacacttgaagatcaagaaagacacttgcttgttaaagttattgat
agaattttgtataaattggatgacttggtccgcccatatgtacataagattcttgtcgtt
attgaaccacttctgattgatgaagactattatgccagagtggaaggcagagaaatcata
tctaatttagccaaggctgctggtttagctacaatgatttcaactatgcgaccagatatt
gataacatggatgaatacgtccgtaatacaacagctcgagcctttgctgttgttgcctct
gcccttggtattccatctttgcttccttttttgaaagcagtatgcaaaagcaaaaagtct
tggcaggctcgtcatactggaattaaaattgtgcagcaaattgccattctgatgggatgt
gctattttgccacatctaagaagtttggtggaaattattgaacatggtttggttgatgag
caacagaaagtccgcaccatcagtgctctggctattgctgctttggcagaggcagctact
ccttatggaattgaatcatttgattcagtgctaaagcctctttggaaaggaattcgacaa
cacagaggaaagggtcttgctgcctttttgaaggctattggctatctgattcctcttatg
gatgcagaatatgcaaactactacactcgagaagtaatgttaattttgattagagaattc
cagtccccagatgaagaaatgaagaaaatcgtgctaaaggtggttaaacagtgttgtggg
actgatggagtagaagcaaattacatcaagacagaaattcttcctccattttttaaacat
ttctggcagcatcgaatggctttggatagaagaaattacagacagttggtggataccaca
gttgagcttgcaaacaaagtgggagctgctgaaataatatcaagaattgtagacgactta
aaggatgaagctgagcaatacaggaaaatggttatggaaaccattgaaaaaataatggga
aatcttggagctgcagatatagatcataaacttgaggaacagcttattgatggcatcctt
tatgcatttcaggagcaaaccacagaggattctgtgatgttaaatggatttggcactgtt
gtaaatgctcttggaaaaagagtaaagccttacctgccacaaatttgtggaacagtctta
tggaggttgaacaataaatctgctaaagtgagacagcaggcggctgacttgatatcacgc
actgcagttgtcatgaaaacttgtcaagaggaaaaactgatgggacatttgggagttgtc
ttgtatgaatatcttggagaagaatatcctgaggtacttggaagtattttaggagcactt
aaagcaattgtgaatgttataggcatgcacaagatgacacctccaatcaaagatcttctt
ccaaggttaacacctatcctgaaaaataggcatgagaaagtacaggagaactgcattgat
cttgttgggcgtattgctgacagaggtgcagaatatgtgtccgcaagggaatggatgagg
atttgttttgagttactggaactgctaaaggcacacaaaaaagcaattagaagagcaact
gttaatacttttggctatattgcaaaagctattgggcctcatgatgtccttgccacactt
cttaataatctgaaggttcaggagagacaaaaccgagtttgcacaacagtagcaatagct
atcgttgcagaaacctgctcaccatttacagttttaccagcgctaatgaatgaatacaga
gtgccagaactcaatgttcaaaatggtgtgttgaaatccctctctttcctttttgaatac
attggagaaatgggaaaggattatatttatgcagtaacaccactgctggaagatgcttta
atggacagagatcttgtgcatagacaaacggccagtgcagttgttcagcatatgtcactt
ggcgtatatggatttggatgtgaagattctttgaaccatttgctgaactatgtttggcca
aatgtgtttgaaacctcccctcatgtaatccaggctgttatgggtgcacttgaaggcctg
cgagttgccattggtccttgtagaatggtgcagtattgcttacagggcctctttcatcct
gccagaaaagtgagggatgtatactggaaaatatacaattcaatatatattggctcacag
gatgccctcattgctcattatcctcggatatataacgatgaaaagaacacctacattcgc
tatgagctcgactacactttgtaa
DBGET
integrated database retrieval system
