Xenopus laevis (African clawed frog): 403380
Help
Entry
403380 CDS
T01010
Symbol
smarca2.L
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X3
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
403380 (smarca2.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
403380 (smarca2.L)
03036 Chromosome and associated proteins [BR:
xla03036
]
403380 (smarca2.L)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
403380 (smarca2.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
403380 (smarca2.L)
Chromatin remodeling factors
BAF complex
403380 (smarca2.L)
PBAF complex
403380 (smarca2.L)
GBAF(ncBAF) complex
403380 (smarca2.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Bromodomain
SnAC
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
TFIIA
Motif
Other DBs
NCBI-GeneID:
403380
NCBI-ProteinID:
XP_018113996
Xenbase:
XB-GENE-1013848
UniProt:
A0A974E004
A0A1L8HY81
LinkDB
All DBs
Position
1L:complement(138857961..138971475)
Genome browser
AA seq
1572 aa
AA seq
DB search
MATPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGLSPGSVHSMMGPSPGPPSVSHQLSNM
GSSDYTPESMHQMHKQPMDNMHEKGMSDDLHCGTMKSSSMRPPHTGMGPPQSPMDQHSQG
YMSPHPSPLGAPEHVSSPMSGGGPTPPQIPAAQPGLLIQGESQVMSQPTRGPSAFSQVQL
HQLRAQILAYKMLARGQSLSENLQLAVQGKRTLPAIQQQQQQQSQQQPPATYSRPPSMAM
HAMPVPPAGTGPVPGITGHVAGMMQKPWGEAGQSSDLNVPNAQQKLVVPPPSGRPSPAPQ
TAPPSVSLPGPSVPQPTPAPIQLQQKQNRISPIQKPQGLDPVEILQEREYRLQARIAHRI
QELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRS
KRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLSK
AVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVA
NLTSLVWEHKKAQAAKEKKKKKRKKKTEENVEGVGSGLGVDGELIDESSQMSDLPVKVIH
TETGKVLLVPEAPKASQLETWLEMNPGYEVAPRSDSEGSSSEYEDDEDEEDSSRLDVEEK
KRLGLFTEDVAHDAKQIIETAKQDVDDEYSMQADARQSQSYYGVAHDIIERVEKQSSLLV
NGTLKHYQIQGLEWMVSLFNNNLNGILADEMGLGKTIQTIALITYLMEYKRLNGPYLIIV
PLSTLSNWQYEFDKWAPTVVKIAYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHIL
AKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLP
TIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE
KVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPF
IFQHIEESFAEHLGYANGIINGPDLYRTSGKFELLDRILPKLRATNHRVLLFCQMTSLMT
IMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEEGSPYFIFLLSTRAGGLGLNLQAADT
VVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ
AGMFDQKSSGHERRAFLQAILEHEEQNEEEDEVPDDETLNQMIARHEEEFELFMRMDLDR
RREDARNPNRKPRLMEEDDLPSWIIKDDAEVERLTCEEEEKIFGRGSRMRRDVDYSDALT
DKQWIRAIEDGNLEEMEEEVRLKKRKRRRNVDKDVVKEDGEKTKKRRGRPPAEKLSPNPP
KLTKQMNAVVDTVINYKDGNGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNH
KYRSISDLEKDIMLLCHNAQTFNLEGSQIYEDSIVLQSVFRSARQKIVKEDESEEDSNDE
EDDDEEDDESESESKSMKVKIKLSKKDDKAREKGKGKKRQSRGKAKPVVSDYDSDEDQDD
NEPSEGSGSDDE
NT seq
4719 nt
NT seq
+upstream
nt +downstream
nt
atggctacgccaacagatccgggtgcaatgcctcaccctgggccttcaccgggtccagga
ccatctccaggtcctattctgggtcctagtccaggtccaggcctgtctccaggatcagtt
cacagtatgatggggccaagtccaggcccacctagtgtttcccaccagctttccaacatg
ggctcatcagattacacaccagagagtatgcatcagatgcacaagcaaccaatggataac
atgcatgaaaaaggaatgagtgatgatttgcactgtggtaccatgaaaagctcaagcatg
agacctcctcacacaggaatgggacccccacagagccctatggatcagcacagtcaaggg
tatatgtctccacatccttcccctttgggagcacctgaacatgtgtccagtccaatgtca
ggaggtgggcccacaccaccacagataccagcagctcagccaggactactcattcaggga
gaatcccaagttatgagccagcctactcgtggaccctccgcttttagccaggttcagctt
catcaactacgagctcaaattttagcttataaaatgttggcgagaggacagtctttatct
gaaaatcttcagcttgcagtgcagggaaagagaactcttcctgctattcaacaacagcag
cagcagcaatcccaacaacaaccacctgctacttacagtaggccacctagtatggcaatg
catgcaatgcctgtcccccctgctgggacagggccagtccccggaattacaggccatgtt
gcgggcatgatgcagaagccttggggagaagcaggacaaagttcagatctgaatgttcca
aatgctcagcagaagcttgtggttccaccacctagcggaagaccttctccagcaccccaa
acagctccaccctctgtttctcttcctggaccttctgtaccccaaccaactcctgctcca
attcagcttcagcagaaacaaaaccgtattagcccaatccaaaaacctcagggcttggat
cccgttgaaatacttcaagaacgagaatacaggcttcaagctcgtattgctcataggatc
caagaactggaaaacttacctggctcactgccacctgatcttcgaacaaaagcaacagtg
gagttaaaagcacttcggcttctaaattttcagcggcagctgagacaggaagtggtggca
tgcatgagacgggatactacacttgagacggctctgaattctaaagcatacaaacgaagc
aagcggcagactttgcgtgaggcccgcatgactgaaaagcttgagaagcagcagaagatt
gagcaggaaagaaaacgaaggcaaaaacatcaggaatatttgaacagtatattgcaacat
gctaaggactttaaagaatatcatcgatcagtcacaggcaagattcagaaactctccaaa
gcggttgccacatggcatgccaacacagagcgagagcagaagaaagaaactgagcgcatt
gaaaaggaaagaatgagaaggcttatggcagaagatgaggaaggttaccgaaaattgatt
gaccaaaagaaagaccggcgtctggcttaccttctgcagcaaacggatgaatatgtggct
aatctgaccagtttggtgtgggagcacaagaaagctcaagctgccaaggagaaaaagaag
aagaagagaaagaagaagactgaggagaacgtggaaggtgtgggctcgggcctaggggtt
gatggagagctaatagacgagagcagccaaatgagtgatctaccggtcaaggttattcac
actgaaacgggaaaagtacttcttgttcctgaagcccccaaagcaagtcagcttgaaaca
tggctggagatgaacccaggatatgaagttgctccgaggtctgacagtgaaggaagtagc
tcagagtatgaagatgatgaggatgaagaagactctagtaggctggacgtagaggaaaag
aaacgccttggtcttttcacagaagatgtagcgcatgatgctaagcagataatagagaca
gcaaagcaggatgtagacgacgagtacagcatgcaagcggatgcccgtcaatcacagtcc
tactatggtgtggctcacgatattatagaaagggttgaaaagcagtcctctctcctagtc
aacggcaccttaaaacattaccagatacagggtttggaatggatggtctctttgttcaac
aacaatttaaatggaatcctggcagatgaaatggggctcggaaagaccatccaaactatt
gcactcataacctacctgatggaatacaagaggctaaatgggccgtaccttattatagtt
cctctttcgactttgtccaactggcaatatgaatttgataaatgggcacctacagtagtg
aaaatcgcttacaagggaacaccagcaatgaggcgttctctagttcctcaactaagatcc
ggaaagtttaatgttctgctaaccacctatgagtatattataaaagacaagcacatactg
gcaaagatccgatggaaatatatgatcgttgatgaagggcatcgaatgaagaaccatcac
tgcaagctaacacaggtgttgaacactcactatgttgctccaagacgcattctactgacc
ggcactccacttcaaaacaagctgccagagctctgggctcttctgaactttctactacct
actatctttaagagctgcagcacatttgagcagtggtttaatgctccatttgcaatgaca
ggagaaagggtggatttaaatgaagaggaaaccatactaattattcgacgtctacacaaa
gttttgcgtcctttcttgctgcggagactgaagaaagaggtggaatctcagttacctgaa
aaggttgagtatgtgattaaatgtgatatgtcagctcttcagaagattctgtatcgccat
atgcaagccaaggggatccttcttacagatggctcggaaaaagataagaagggtaaagga
ggagcaaaaactctcatgaacaccattatgcagttaagaaaaatatgcaaccaccccttc
attttccagcatattgaggaatcttttgctgaacatctgggatatgccaatggcatcatc
aatgggcctgatctttatagaacctctggaaagtttgagttacttgatcgaatcctacca
aagctgcgagccacaaaccacagagtcctgcttttctgtcagatgacgtcactcatgact
atcatggaagactattttgctttccgaaactttctttaccttcgattagatggtacaacc
aagtcagaggaccgtgctgccttgctgaaaaagtttaatgaagaaggatctccgtacttc
atcttcttgttgagtaccagagctggaggtcttggactgaaccttcaagctgcagacaca
gtcgttatttttgacagtgactggaatcctcaccaggacttgcaggcacaggaccgagcc
cacaggattggccagcaaaatgaagttcgcgtgcttcgcttatgcactgtgaatagtgta
gaggaaaaaattctggcagctgccaaatacaagctgaatgtggatcagaaggttatccaa
gccggcatgtttgaccagaaatcttcaggccatgaacgcagggcattccttcaagctata
ctggagcatgaagaacagaatgaggaagaagatgaagttcctgatgatgaaaccctcaat
cagatgatagcaagacacgaagaagaattcgagctttttatgcggatggatcttgatcga
cgtagagaggatgctcgcaatccaaaccgcaagccacgactgatggaagaagatgacctg
ccctcttggatcattaaagatgatgctgaagttgagaggttaacctgtgaagaagaggag
aagatatttggcagagggtcacgtatgcgcagggatgtggattatagtgatgcactcaca
gataaacagtggataagagctatcgaagacggaaacttggaggaaatggaagaggaagta
cggctgaagaaacgcaaaagacgcagaaatgtggacaaagatgttgttaaagaagatggg
gaaaagaccaaaaagagaagaggacggccacctgcagaaaaattatctccaaatccaccc
aagcttactaagcagatgaatgctgtagtggatactgttatcaactacaaggatggcaat
ggaaggcaacttagtgaagttttcatacagcttccttctaggaaagaattgccagagtat
tatgaactgatccgcaaacctgttgacttcaaaaaaataaaggagagaatccgtaatcac
aaatacagaagtattagtgatcttgagaaagatatcatgttactgtgtcataatgctcag
acattcaatttggaaggatcccagatttatgaggattccattgttctacaatcagtcttc
aggagtgcaaggcaaaagattgtcaaagaagatgagagtgaagaagatagcaatgatgag
gaagatgatgatgaggaagacgatgaatcagaatctgagtctaagtccatgaaggtcaaa
attaagctgagtaagaaggatgacaaggccagagaaaagggaaaaggaaaaaagaggcaa
agtcgaggcaaagccaaaccagttgtgagtgactatgacagtgatgaagatcaagatgac
aatgaaccatcagaaggaagtggcagtgatgatgaatga
DBGET
integrated database retrieval system
