Xiphophorus maculatus (southern platyfish): 102217161
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Entry
102217161 CDS
T02923
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X9
KO
K24356
collagen type XXV alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102217161 (col25a1)
Glycosaminoglycan binding proteins [BR:
xma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102217161 (col25a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
102217161
NCBI-ProteinID:
XP_014324448
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Position
14:complement(16675981..16872567)
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AA seq
679 aa
AA seq
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MEKEVKRHYRTTALNIISSLCSVASIAFCVHLSISAADITSRVVGLESGTSERTFIQVRG
YSMEDFNSLVQQRVDELLSQRSYENFAKIRTARQASADCNCPPGPPGKRGRRGRDGEPGP
PGPPGPQGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPPGP
PGPRGPPGDTGKDGPRGLPGLPGDPGQPGEIGLMGLEGPQGPKGSLGSPGIPGTDGLKGD
VGIPGQDGIPGAKGEKGEQGEKGDMGEDGPKGDMGEKGDAGSSAAGIKGEPGEPGRSGQK
GEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGEKGDHGPAGKGDRGEIGPAGPKG
SQGESGMPGPKGSKGDIGDKGDLGSIGPRGPPGQKGDRGATEIIDYNGNIEEALQRITTI
TVTGPPGPPGPIGPPGFKGDRGLPGLPGLDGERGYKGSKGDMGMPGASGEKGSTGLTGLP
GVNGAKGDKGDPGLPGPQGPSITGPPGPPGPHGPSGPMGPHGFPGPKGEPGLHGLKGMRG
EPGHKGDRGHMGLPGASGLDGKPGIRGTDGPPGPAGPAGPKGDIGEKGASGEPGPRGPYG
LPGAAGTPGLDGLPGLKGDKGDDGGRGEKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGP
DGLPMPGCWQKGVTPWLVA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagaagtgaagcgacactatcgcacgacagcgctgaacatcatctcgtcttta
tgttcagtggcgtccatcgcgttctgcgtccatctgagcatcagcgcggcagacatcacg
agccgagttgtgggtttggagagcgggacgtcggagcgcaccttcatccaggtccgcgga
tactccatggaggatttcaattctctggtgcagcagagagtggatgagttgctttctcag
cgctcttatgagaatttcgccaagatcaggacggcaagacaagcctcagctgactgtaac
tgccccccaggacctcctggaaagagaggaaggagaggccgtgacggagaacctggacct
cctggtcctccaggtccacagggagaaaagggagatcaaggtgaccagggaccacggatg
gtcttcccaaagatcaatcatggctttctttccgctgaccagcagctcataaagcgtcgg
ctgattaagggagatcaaggccaggcaggaccacccgggcctccaggcccacctggccct
ccaggaccaaggggccctccaggggacactggaaaggatggacccagaggtttgccaggt
ctaccaggtgatccaggccagccaggagaaattggactcatgggacttgaggggcctcag
gggccaaagggttcactggggtctccgggtatccctggaacagatggactgaagggagat
gttggcatcccaggacaggacggaatcccaggggccaagggtgaaaagggagaacagggt
gaaaagggcgatatgggtgaagacggaccgaaaggtgacatgggcgagaagggtgatgca
ggctcctctgcagcaggcatcaagggcgaaccaggagaacctggacggagtggacagaag
ggagagccaggacttccagggctgcctggactcccagggataaagggtgagccaggattc
ctcggcccccagggagaaccaggacttccaggactcccaggaactaaaggtgagaagggt
gaccacggaccagcaggaaaaggtgatcgaggagaaatcggacctgctgggccaaagggt
tcacaaggagaatctggtatgcctggacctaaagggtcaaagggggatattggagataaa
ggagatttgggatctattggcccaagaggtcctcccgggcagaaaggagacagaggagcc
actgaaatcattgactacaatggaaacatcgaagaagctctgcagaggattaccactatt
acagtcacgggtcctcctgggccacctggaccaataggaccaccaggctttaagggagat
cgcggtctgcctggtcttcctggactcgatggggagagaggttataaaggttccaaggga
gacatgggaatgcccggagcgtcaggggagaaaggaagcactggtttaactggcttacct
ggcgttaacggagcaaaaggagacaaaggagatccaggacttccaggtccacaaggtcca
tctataactggccctccagggccaccaggacctcacgggccctcgggacccatgggaccc
catggcttcccggggcctaagggagaacctggtttgcacggactaaagggcatgagaggg
gaaccgggacacaaaggagatcgtggacatatgggtctccctggagcctccggcttggac
ggcaagcccggaattaggggcacagacgggcctccgggtccagctggaccggccgggccg
aagggtgacattggtgagaaaggtgcatcaggtgagccgggacctcgaggaccttatgga
ctacctggagccgccggaacgccaggtttggatggtttacctggattaaaaggagataaa
ggcgacgatggggggagaggagaaaagggggagaagggaaagaagggcaaaaaagggcct
aagggcgagaaaggagaacagggtgccccaggattagatgcaccctgcccattgggtccg
gatggattaccaatgcctggttgctggcagaagggagtcacaccgtggcttgtagcctga
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