Xiphophorus maculatus (southern platyfish): 102217587
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Entry
102217587 CDS
T02923
Symbol
col8a1
Name
(RefSeq) collagen alpha-1(VIII) chain
KO
K23455
collagen type VIII alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
102217587
NCBI-ProteinID:
XP_023192266
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Position
7:10960375..10973303
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AA seq
743 aa
AA seq
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MPSLIGPLATVLLQLVVFISVTGGAYYGHMQHPQPYQPMHHLQHINMGKGGFPQQQYLGK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NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgccttcccttatagggcccctcgccactgttttgctccagcttgttgtcttcatatct
gtgactggtggtgcgtactacggacacatgcaacaccctcagccataccagccaatgcac
caccttcagcacattaacatgggcaagggaggttttcctcagcaacagtaccttggcaaa
gaagtgccctacatgcagtttccacactacaggaaggagctgccccagatgcccctactc
aaaggcaaagaaaatcctcggaaagggggaaactacaatgctggcaaagacaaaggtcta
acaattcctagtgcagtagaaggagctgccctgggagaacaaggcccagctggaccacct
ggaccagagggacctccaggacctcctgggcctccaggagatggtctgcctggtcctgaa
ggccaactgggacctccaggtccaccaggattgcctggaatagggaaactaggcttgcct
ggagtgccaggaaaaccaggtgtaattggtgagcctgggcctcagggaaaaatgggacca
agaggtgaagaaggccccactggtcaaccaggtcctcagggacccttgggcccacctggg
cttcctggaataggtaaaccagggatgcagggattaccaggacaaccaggtggcaaagga
gaaccaggtcacaagggcctgccaggactgccgggattaccgggaccaaaaggagacaaa
ggactgggcctgccaggacagcctggtcacaaaggacttcctgggcctcctggaccgact
ggcccaagagggctgccaggttttggaaaaccagggttgaatggcttgccaggtccacaa
gggccaccaggacataaaggacatcctggagactctgggattcctgggccagctgggaaa
ggaggaccacctggcccaccaggtctacctggtcaaggaaagccaggtcaaaatggtctg
cctggagaaccaggaaagacaggtgaaaatggccctccagggccaccaggattgccagga
aaaccaggacttccaggatttggtaaacaaggactttcaggaccaaaaggtgataaagga
atgaatggaccacctggacctccaggacttaaaggagataagggccatgatggattacct
ggaatgcttggacctcctggaccaagtggtccaccaggtcctccaggaccgatcggacga
cctggaagcggaggtgcacctggtgctaaaggagattgtggagacggaggacctaaaggg
ctggatggggccaaaggtgaccttggtcctccagggctacctggtaagactggtctaact
ggggaaattggggaaccaggtcctagaggtcaacctggaccaagtggtcctaaaggtgct
gatgggtataaaggtctacctggtattgctggtccccccggaactcctggtttaagagga
gtggctggattacctggggaaaagggtattcaaggacctcaaggaatccctggaatagat
ggtacagctggaccaatgggatctccaggtcccacgggacctaaaggagaaaatggacta
cctggtccaccaggcactgcagtcatttcgagtccaggcctgcctggtcctgcaggaccc
caaggaagagagggaccatctggactcccaggacagccaggtcaacctggtccacctgga
ccaccaggaccacctggtgaacctgttttttctccggaaatggctggggttctttctgag
atgggaccaggactagatggtgttaaagctggaagttatggcaaaaagagcaaatacggt
ggttatggggctgaagtaatgggttccagtgggcttgaaatgccagcatttacggctgta
gcatccactcccttcccacctgtggggagtccggttgtttttgataagctgttgtacaat
ggccgccaaaactacaatcctcagacaggaatcttcacctgtgacatccccggcatttac
tactttgtctaccacattcattgcaagggagagaacgtgtgggtggctttgatgagaaac
aatgagcctgtgatgtatacatacgatgaatacaaaaaaggtaccttagaccaagcctct
ggaagtgcagtcctgcctctccaacctggggacactgtgtatattcaaatgccatcagat
caagcctcaggactttatgctggacagtatgtgcaatcctcctttactgggtatttgctc
tatccaatgtaa
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