Xiphophorus maculatus (southern platyfish): 102221335
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Entry
102221335 CDS
T02923
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04510
Focal adhesion
xma04512
ECM-receptor interaction
xma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102221335
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102221335
09142 Cell motility
04820 Cytoskeleton in muscle cells
102221335
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xma04147
]
102221335
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102221335
Exosome [BR:
xma04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102221335
Glycosaminoglycan binding proteins [BR:
xma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102221335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102221335
NCBI-ProteinID:
XP_023207253
LinkDB
All DBs
Position
18:complement(1317051..1360001)
Genome browser
AA seq
1663 aa
AA seq
DB search
MSAGAGSAPRRHPWIWCFLALITAPPGGQGGDLMEPCGGRDCTTCQCLPAKGARGFPGPL
GPQGPRGPAGFPGGQGLPGQKGGRGAEGPMGGHGVKGDAGPIGLQGFPGLDGVPGLPGPA
GGPGHPGLDGCNGTRGNQGYPGLPGEQGPNGEPGFTGPKGLKGEPSANFIQYPGAPGDAG
PSGLLGLPGEDGLPGPTGPAGPTGSDGPTGSPGSPGPRGPPGQKGRLLPGPKGEKGDQGP
QGPPGPFEYIDVPEDLYIKGEKGSSGEPGQRGVQGLQSRDAPPGIKGEAGIVGFPGARGD
SGRPGPSGRKGPRGMEGSQGLPGLIGQEGFKGFAGDPGPEGPPLIDDITHIGEAGDPGFP
GKRGPPGDMGPMGTLGPPGFPGSSTPGLKGFDGPKGQPGYKGERGDPGQTTDEVAHGEPG
KPGQRGQRGPKGQQGLPGTVCLKGDKGGMGEPGDGGFPGPRGDDGFRGDPGECLCKSTDL
KGPPGLPGANGLPGSIGQRGPPGPKGEMGYSGDPGAKGAQGPRGFRGPNGQKGQKGFTVA
GLKGEKGEKGKGGPEGAQGTWGTVGPPGRPGPPGDPGLKGDSVPGFPGDKGFPGPQGPNG
FPGRSGPPGVSVAGTPGERGTPGNPGPDGFPGPPGLKGDPGDHGLWFSNPGRPGPKGHRG
PPGAPGPPGANGTAGIRGPDGPKGDQGLSYAPGPPGDQGPPGAAGDPGEKGTDGYCDDGC
PGSPGPLGPPGPPGPRGNIQSGPQGPEGQPGPPGSPGRKGRLGPPGNQGAPGPQGPSGYP
GANGHKGYAGAPGRPGPPGSTSDDCKAGTPDNMGPPGPPGPCGPQGPGGPRGCKGEVGDK
GHSAIGPKGKIGEPGVQGSPGTQGCKGPQGPVGDTGSMGPSGGKGLTGPEGFEGRPGFPG
NKGNPGGSGKPGERGPKGQDGGQGCAGPKGPKGHKGCAGPPGELIPRPEKGPIGPRGCPG
DPGFSGPRGNKGEAGCTGNTGYPGPNGPPGCRGPQGPRGPQGKQGPPGPPGTKGHQGYFG
FPGLNGELGDSGCQGPPGRPGSPGCRGPRGDKGDALGGPGPPGDKGHPGNRGPDGPCGPP
GDCGHKGLCGPQGQRGCKGHKGLRGCPGEPGVAGPPGPRGYHGLRGPPGRDGVDGPPGRD
GNPGNRGAPGPPGLHGLDGLSGQAGAMGSKGVCPDISKSEKGPPGPKGLPGPPGPPGPTC
PPKNGPPGPKGPTGPQGPPGDSGPPGPPGGDCKNPKPGLCGDPGDRGPDGDPGCPGEMGD
PGPNTPNCGDKGDTGDPGCSGPKGRHGYQGPPGPPGNPGNQGPKGMRGDSGLLGIPGEQG
PRGHPGRPGPKGRPGVNGSDGPKGQKGRILSNGPPCSPVRGPSGPPGPPGASGDRGQRGE
IGLLGRNGIKGDPGADGAMGPQGQEGSLGQMGESGQPGENGVLGEKGDPGPPGDPGPPGP
TGGMKPGFLLVKHSQSKNEPTCPPNMHPLWTGYSLLYLEGQEKAYSQDLGQAGSCIPVFS
TLPFSVCETKKCKYANRNDKSYWLSTMKPQPDHPFRGDAIKEYISRCVVCEAPSAAVAMH
DPNSREPPSCPPNWSRLWTGYSFIMFSGGGDEGGGLSLMSPGSCLSQFKAQPFVECQGAR
GTCHFFANIYSFWLTTQSGTEGALTDSDQQRAHVAQCSVCIRM
NT seq
4992 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccggtgcaggctccgccccccggcgccatccatggatctggtgtttcctggct
ctgatcacagctcctccaggaggtcaagggggcgacctgatggagccgtgtggcgggcgg
gactgcaccacctgccagtgtttacctgccaaaggagccaggggtttcccaggtcctctt
ggtccgcaggggcctcgggggcctgcaggcttcccgggcggacagggacttccagggcag
aagggcggcagaggagccgaggggccgatgggaggtcatggggtaaaaggagatgctggc
cccatcggtctgcagggttttccgggattggacggagtcccgggcctccccggcccggct
ggagggcctggtcatccaggtctggacggatgcaacggaaccagaggaaaccaggggtat
ccggggcttccaggagaacaaggccctaatggagaaccgggttttaccggtccgaaggga
cttaaaggagagccatcggccaacttcatccagtaccccggagctcctggcgacgccggg
cccagcggactgctgggtctgccgggggaagatggtctgccggggccgaccggacccgcg
gggccaaccggatcagatggacccactggctctcctggttcccccggacccaggggcccg
cctggtcaaaaaggtcgattactgccgggaccgaaaggagagaagggagaccagggcccc
caggggcctccagggcccttcgagtacattgacgttccagaggacttgtacatcaaaggg
gagaagggatcttcaggggaaccaggacagcgtggcgttcagggactccagagtcgggat
gcgccgcctgggatcaaaggagaggcggggatcgttggatttccaggagccagaggggat
tctggtcgacccggtccgtccggacggaaaggcccccgggggatggaagggagccagggc
ctcccaggactgataggtcaagaaggttttaagggctttgctggtgatccgggccctgaa
ggcccccctctgatcgatgatatcactcacataggcgaggccggggaccctgggttcccc
gggaagaggggccctcctggcgacatggggccaatgggaacgcttggtcccccaggattc
ccaggatcatcaacaccaggacttaaaggttttgatggtccgaagggccaacctgggtac
aaaggggagagaggagatccgggtcagactacggacgaagtggcacacggagaacctgga
aaaccaggacagcggggacagcgagggccgaagggacagcagggcctcccaggaacggtc
tgtcttaaaggagacaaaggaggcatgggagagccaggtgatgggggctttccaggaccg
agaggtgatgatggctttagaggtgatcctggtgaatgtctatgcaaatctactgacctg
aagggccctccagggcttccaggggctaacgggctcccagggtcaatagggcagcgcgga
cccccaggccccaaaggagagatgggttactctggagacccaggagcgaagggggcccag
ggaccgaggggcttcagggggcccaacggccagaaaggacagaaaggtttcactgtggcc
ggcttgaaaggtgaaaagggagaaaagggcaaagggggccctgaaggggcccaaggaacc
tgggggacagtcggacccccagggcgcccaggaccacctggagacccgggacttaagggg
gacagtgtccctggtttccctggagacaaaggcttccctggaccccagggaccgaatgga
ttcccaggacggtcggggccccctggagtcagcgtggcggggacccctggagagcgcggg
acccctggcaacccgggacctgatggatttcctggaccgcctggactgaagggagatcca
ggagaccatggcctctggttttcgaatcccggccgtccggggccgaagggacaccgtgga
ccaccaggtgccccaggtcctccaggtgctaatggcaccgctggcatccgagggccggac
gggcctaaaggggaccagggactgtcttacgctccaggaccgcctggggaccaaggacct
ccaggagctgctggagatcctggagaaaagggaaccgacggttattgtgatgatggatgt
ccaggttctccggggccgctgggcccccctgggccccccggaccaagaggcaatattcag
agtggcccccaggggcccgaaggccagcctggaccgccggggtccccaggacgtaaagga
cgcctcggccccccgggcaaccagggagcaccaggtccccaggggccttctggctaccct
ggagcgaatggacacaaaggatatgccggggcccctggccgaccaggtcctccggggtcc
acatcagacgattgtaaggcagggacgcctgataacatgggccctccaggccctccggga
ccttgtggccctcaaggacctggtggccctcgcggttgtaaaggtgaagttggggataaa
ggtcattcagctattggtccaaaaggcaagattggagaacctggagttcaggggtctcca
gggacacaaggatgtaaggggccccaaggccctgttggggacactggctcaatggggccc
tctggtgggaaaggtctgactgggccggagggctttgaaggaaggccaggttttccagga
aacaagggcaatcctggaggctcaggcaagcccggagagcgggggcctaaaggacaagat
ggtggtcagggttgtgcaggcccaaagggaccaaaaggtcacaaaggttgtgctggtcct
ccaggagaactcatccccagacctgaaaagggcccaataggaccacgaggatgccccggc
gatcccggattctccggaccacgaggaaacaaaggtgaggctggatgcacagggaatact
gggtatccgggccccaatggacccccaggttgtaggggacctcagggaccccgagggccc
cagggtaagcaaggcccgcccggacctccaggaaccaaaggacatcaaggatacttcgga
tttcctgggctgaatggagaactgggcgactcaggatgtcagggaccccctgggagacct
gggagtccaggatgtcgtggacctagaggtgataaaggagacgcccttggtggtcctggt
ccacctggagataagggccatcctgggaaccgaggccctgatggcccttgtggtcctcct
ggagattgtgggcacaaaggcctctgtggaccacaaggacagagaggatgcaagggacac
aaaggattacgaggatgccctggtgaaccaggtgtggctggtcctccagggcccagaggt
taccatgggcttcgagggcctcctggtcgagatggagtggacggtcccccggggagggat
ggtaacccaggaaacagaggagctccggggccaccagggcttcatgggttagacggactg
agtggacaggcaggtgccatggggtccaaaggtgtatgtccggacatcagtaaaagtgaa
aaaggccctccaggtcctaaaggtcttccaggtcctccaggtccaccaggtcctacttgt
ccacccaagaacggcccaccaggaccgaaaggcccaacgggaccccaggggcctccaggt
gatagtggaccgccaggtccacctggaggcgactgtaaaaacccaaaaccagggctatgt
ggggatcctggtgataggggcccagatggagatccaggttgtcctggtgaaatgggagat
cctggtccaaatacaccaaactgtggggacaaaggagacaccggtgatccagggtgctca
gggccaaaaggacgccatggatatcaggggccacccggaccaccaggcaaccctggaaac
caagggcccaaaggtatgagaggcgactcgggtttgctgggcatacctggagaacagggt
ccgaggggtcacccaggtcgcccagggcccaaaggaaggcctggggtcaatggatcagac
ggtccaaaagggcagaagggccgaatcttatcgaatggccctccctgctcaccagttagg
ggccctagcgggccacctggccctcctggagctagcggagatcggggccagaggggagaa
attggcctcttaggtaggaatgggataaagggggatcctggggctgatggagcaatggga
ccccaggggcaagaaggttccctgggacagatgggagagtcaggccagcctggagagaac
ggagttctgggagaaaagggtgatccgggtccccccggtgacccaggtccacctgggccg
accggaggcatgaaaccagggttcctgttggtgaaacacagccaatcaaagaatgaacca
acatgtccgccaaatatgcatccactttggactggatacagcctgctgtacctggagggc
caggagaaggcgtactcccaggatctgggtcaggccggttcctgcattcccgtgttctcc
accttgccgttctccgtctgcgagaccaaaaagtgcaaatacgccaatcgaaacgacaaa
tcctattggctgtcgacgatgaagccgcaaccagaccatccattcagaggagatgccatc
aaggagtacatcagccgctgcgtggtgtgtgaggcgccctctgctgccgtggccatgcat
gaccccaactccagagagccaccaagctgtccccccaactggagccgcctgtggactgga
tactccttcatcatgttttcaggtggcggtgatgagggcggcggcctctctctgatgtcg
ccgggcagctgcctgtctcagttcaaagcccagcccttcgtggagtgccagggcgcgcgg
ggaacctgccacttcttcgccaacatctacagcttctggctgaccacccagagcggcacc
gagggcgcgctgaccgactccgaccagcagagggcgcacgtcgcccagtgcagcgtctgc
atccgcatgtga
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