Xiphophorus maculatus (southern platyfish): 102230656
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Entry
102230656 CDS
T02923
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
LapA_dom
Motif
Other DBs
NCBI-GeneID:
102230656
NCBI-ProteinID:
XP_023182744
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Position
22:16814098..16841008
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AA seq
1737 aa
AA seq
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MDELTRQMEISGEKVLTETVTSTTRLTSLPPKGTSGSNHRNMSSSAGGLGFEKNVLTQNS
SGTYFSSSSIGVTSNYSSSSGIYLGGDSSGGGEGGGSYIDGEGYGSGGGGRGGSSGSTYL
VSSVSKVRSSSSGGARRAQTGGSSVGLSPGFRERKAIASRSGGYDGSSSGNSSPEFPRKD
YGNYCSGATRGRSESRESEIRARLQSASPSAGRWAELEDVKKLLKGRSSSVSPTRSSASV
TLPVPKKASVETKTVSVGTQSAASTLFEPVVQTNGFHTIDVSGLYDSRLTSRQRDSGVQA
GQHTVTVKSCHCDAGVKSSQYDVSLGSGQYDTGLKSGRYDMSLKSGQYDTTGRSGQYDTL
DSAFPTFSWSTSTLPSSTTVVAGNPTSYTYQLGQVSANNMSGGSPPLSPVPQQSLSVYGF
QNNLAPASVGVLTTSGGNVTANLGGYGVQKNVANGSAVISSGISTATRSQIDDVYKRDYR
YMASDKENVPARREGEMLILAKDSGKQFTTTSSTHMGGGSLSGDSIKKEKLISSYVDTGT
LKAETGNSYYGTSGVLMKDKATYAEIHRDGGVFGGGGLCCCSDSCCSWWKWLLGLLLLCL
LLLGLLFGLIALAEDVRKLKKQVSTLENEVSVANARTSRLSAGSSNDVNTYVSGGGGGGG
TGTDNTLILGFGGAGGGGSDSKTQIRIAGAGAGGSASRNDVDVGVVGVGGAGGAVGAGTS
SSSSSGTSFSGSAGSAGTSLSGGAGSAGTDGVSAGGASFGGGTGSSGTSFVIGTGGGTSG
DVGTGVRGRYIDSAYLQMAIHQMLKSEMQSQAFRGFLASSVQGERGLPGPKGDSGLKGEP
GFPGNPGAPGPMGHAGPEGPKGQKGSQGEQGVEGPPGVRGREGLPGPRGDLGPAGFGLKG
DKGEAGSVGSAGAPGQKGAQGIQGPPGPQGFRGEAGLPGPKGDRGLAGFQGLKGETGEKG
IRGLQGEPGLPGPAGEKGSKGSMGLSGQDGEKGSRGDQGPHGPPGLRGSAGPPGDAGLPG
TPGLQGPPGIPGNPGQPGAKGEPGQAGRIINAAGSTSVGIPGPPGPAGPPGPAGSPGLSG
PIGPAGLPGPPGPKGDRGYKGEQGETGITRGTISSSTAERTFGAGGSSSFRGIPGPPGPP
GPPGRPGDSRQGPPGPPGPPGQPGYGIPGPKGEKGDVGFASSSGTYYTGPPGPPGQPGQP
GPKGATGSPGPRGYTGDTGAPGIPGASRGSVSVTSGPAGPPGPPGPPGLPGSFASSTEMR
QYISDYLSRYRLSSLPGPPGPPGPPGLPGTFSGSIDDISTRIIAYLRRSDSGFSIGVQGP
PGPPGPPGPASGSLTVNALITMLQRDDVRRYLSGPPGPQGPPGPPGASGGLSGTYRVEEI
ATYVFNIMNERGIARGPPGPRGLPGPPGAPGAGGSGFTTATIDYSALIRNSDFRSWITSA
VQQGPPGAPGLPGPPGPQGPPGVSTATVYGSGGRGYSLEEIQRYLQGSGFRGLPGPPGPP
GPQGPPGAVTGSVSYSGNLPRESIRAEIQQYLSSDSVRRTIVGPPGPQGPKGQKGERGEP
GYSQSYIQSHSYQQSDGSYGSQRRDVDVSRLSETLDYSNVAMKVTDYIKNQGLLQQYISD
GSWRTNVRAIQGPPGPPGPPGPPGYSRVIGSYGNVTADLMDFFRRYGTVPGAPGSPGPKG
DRGHPGPKGDKGDPGPPGLPGIPAPLTVQIPHKVQKREAGDKGAVRQKRRRRQAGFG
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atggacgagttaacaaggcagatggagatctcgggagaaaaggttctgacagagaccgta
acctccaccactcgactgacttctctcccaccaaagggaaccagcggatcaaatcacagg
aatatgtccagcagtgccggagggctgggttttgagaagaatgtcttaacgcagaacagc
agtgggacctacttctcttcatcctctataggcgtgacgagtaactacagctcctcctca
ggaatctacctgggaggagattcctctggaggaggcgaaggtggcggaagctacatcgat
ggagagggctacgggagtggaggaggaggaagaggaggaagcagtggaagcacttatctc
gtgagctccgtgtcaaaggttcggtccagctcgtcgggtggtgccaggagagctcagact
ggggggtcatcagtggggctgtcgccaggtttcagagagaggaaggccatagccagccgc
tcgggaggctacgacgggagttccagtggtaattcctccccagaatttccacgcaaagac
tatgggaactactgctccggtgccacaagagggaggagtgaaagcagagagagcgagatc
agagccagattgcaaagtgcctccccatctgccggaagatgggcagagctggaagacgtg
aagaagctgctgaagggacgctccagcagcgtcagtccaacccgctcctccgcctcagtc
accctgccagtacctaaaaaagccagcgtggagaccaagaccgtctcagtgggcactcag
tcagcagcttcaactctatttgaacctgttgttcagaccaatgggttccacactatcgac
gtgtcgggcctctatgacagcagactgacatccaggcagcgcgactctggtgtccaagca
ggccaacacactgtcacagtaaagtcatgccactgtgacgccggagtcaaatccagccag
tatgacgttagcctgggctcaggtcagtacgataccggtctgaaatctggacgatatgac
atgagtctgaaatcaggccagtatgacaccactgggagatcaggccaatacgacaccctg
gattcggcctttcccactttctcctggtccacctccacgctgccctcctccacgaccgtc
gtcgctggcaaccccaccagctacacctaccagcttggtcaggtcagcgccaacaacatg
tcaggaggctccccgccgctcagtcccgtcccacagcaatctctatcagtttatggtttt
cagaataatctggctcccgcctctgtcggtgtgctcaccaccagcggcggcaacgtaacc
gctaacctgggagggtatggcgtccagaagaacgttgcaaacggcagtgctgtcataagc
tcagggatctctacagccactaggtcccaaatcgatgatgtctataagagagactacaga
tatatggcctctgacaaggagaacgttcctgccaggagggagggagaaatgctcattctg
gcaaaagacagtgggaagcagtttaccaccaccagcagcactcatatgggaggaggttca
ctttcaggagactcaataaagaaggagaagcttatttccagctacgttgacacgggcact
ctgaaagcagagacaggcaattcatactacggaacatccggagtcctgatgaaagataag
gcaacctatgcagagattcacagagacggcggcgtctttgggggaggaggactgtgctgc
tgctccgactcctgctgctcctggtggaagtggctgctgggcttgctgctcctctgcctg
ctcctgctcgggctcctgtttggcctcattgcactggccgaggacgtgaggaagctcaag
aagcaagtatcgactctggagaacgaggtctcagtcgccaatgctcgcactagtcggctc
tccgccggttcttccaatgacgtcaacacctatgtgagcggcggagggggagggggaggc
acaggcaccgacaacacactcatcctcgggttcggaggtgcaggtggaggtggctcggac
tccaaaacgcaaatcagaattgctggtgctggtgcaggcggatctgccagtcggaatgat
gttgatgtcggcgttgtgggtgtcggtggtgctggaggggctgtgggagctggaactagc
tccagtagcagctctggtaccagtttcagtgggagcgccggcagtgctggtaccagcttg
agcggcggtgctgggagtgctggtactgacggtgtcagtgcaggcggtgccagttttggc
ggcggcaccggcagctccggtaccagtttcgtcattggcactggcggtgggaccagcggt
gatgtcgggactggagtgcgtggaagatacatagatagcgcctaccttcagatggccatc
catcaaatgttgaagtcagaaatgcagtcacaggcattcagaggcttcctggcatcctca
gtgcagggagagaggggattacctgggcctaaaggggactctggactgaaaggggaacct
ggtttccctggaaatccaggcgcaccaggtccaatgggacatgctggtcctgaaggtccc
aaaggacagaaaggaagccaaggtgagcaaggagtggaagggccaccaggtgtcaggggc
cgcgaaggactacctgggcctagaggcgacctaggacctgcaggctttggactcaaaggg
gataaaggtgaagctggatctgttggatctgctggggcccctggacaaaaaggtgcacaa
ggaatccaagggccgcctggtcctcagggtttccgtggtgaggcaggactacctggacca
aaaggtgatagagggcttgctggattccaaggactcaaaggtgaaacaggtgaaaaggga
atcagaggtctgcaaggggaacctggtttaccaggaccagcaggagagaaaggctccaaa
ggatctatgggactttctggacaagacggtgaaaagggatcaagaggtgaccagggaccg
catggcccgcctggactcaggggttctgctgggcctcctggagatgctggacttccagga
acaccagggcttcaaggaccaccaggaattccaggaaatcccggccaaccaggagccaaa
ggtgaacccggtcaagctggacgaatcatcaatgcagccggctctacttctgttggcatc
ccaggaccacctggacctgctgggcccccgggtcccgctggttctccaggactatcaggt
cccattggccctgctggtctgcctggcccacctggtcctaaaggtgacagaggatataag
ggagagcagggagagactggaataaccaggggaaccataagttcatctacagcagagagg
acgttcggcgctggaggaagctcttctttccgtggcatacctgggccaccgggtccacct
gggcctcccggacgtccaggcgactcgagacaaggacctccaggaccaccagggcctcca
gggcagccaggttatgggataccaggacctaaaggagaaaagggagatgtgggttttgcg
tccagctcaggaacatattatactggaccaccaggacctcctgggcagcctgggcagcct
ggacctaaaggagcaacaggctctcctggaccccgcggatacacaggagacactggagct
ccaggaattccaggcgcatcaagaggttcagtctcagtcacctctggccctgctgggccc
ccaggacccccagggcctcccggcctgcctggttcctttgcttcctccactgagatgcgg
cagtacatttcagactatctgagtagatacagactgagcagtctacctggccctccgggt
ccacctgggcctccgggactcccagggaccttctcagggtctatagacgacatctctact
cgcatcattgcatacctgcgacgttcagactcaggcttcagtatcggcgttcagggacct
ccaggaccgcccgggcctcctgggcccgcatctggctccctgactgtcaacgctctcatc
accatgcttcagagagatgacgtgagaagatatttgtctggaccaccggggcctcaagga
cctcccggacccccaggggcctcaggaggactctccggcacttacagagtagaggagata
gccacatatgtcttcaatatcatgaacgagagggggattgcgagaggcccgccaggtcca
cgaggtctgccgggcccccccggagctccaggcgcaggaggctctggcttcaccaccgcc
accatcgactactcggctctgatccgaaattcagatttccgctcctggatcacttccgct
gtgcagcaaggtcctcctggtgccccagggctgcctgggcctcctggtcctcaggggccc
ccaggggtctccacggcgacggtgtacggatcgggaggtcgtggctacagcttggaggaa
attcagcgctacctgcagggttctggattcagaggtctccctggacccccaggccctcca
ggtccccagggcccaccgggcgctgtcaccggatcagtgtcctacagtggaaatctccct
cgggagagcatccgcgctgaaattcaacagtatctgtctagcgacagcgttcgacgtacc
attgtcgggcctccaggtcctcaaggtccaaagggtcagaagggagaacgcggagagcct
ggctactcccagagctacatacagagccacagctaccaacagagcgacggtagctatggc
tcccagcgcagagacgtcgatgtcagcaggctctccgagacgctcgactactccaacgtc
gccatgaaagttacagactacattaagaatcaaggcctgctgcagcagtacatctccgac
ggttcatggaggacaaacgtccgagcaattcaaggacccccaggtcctccgggccctcca
ggaccgcccggctacagccgtgtgattggctcctatggcaacgtcacggctgacctgatg
gacttcttcaggagatacggcaccgttcccggcgcgccaggaagcccaggtccaaaggga
gacagagggcaccccggacccaaaggagacaaaggtgatccaggacctccaggtttacct
ggaatcccagcgcccctcaccgtccagattccacacaaagtgcaaaagagagaagcaggc
gataaaggggcggttcgtcaaaagcgtcgtcgacgtcaagccggcttcggctga
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