Xiphophorus maculatus (southern platyfish): 102235720
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Entry
102235720 CDS
T02923
Name
(RefSeq) collagen alpha-2(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102235720
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102235720
Glycosaminoglycan binding proteins [BR:
xma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102235720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
102235720
NCBI-ProteinID:
XP_023192694
Ensembl:
ENSXMAG00000006619
LinkDB
All DBs
Position
7:30121933..30168067
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AA seq
1493 aa
AA seq
DB search
MMICVRLRILVFLAVSQVLIVTCQDADSDGSCEQDGQIYTNNDIWKPTPCRICVCDKGNV
LCDDIHCDDVTNCEKMYIPEGECCPVCQGDSPSTGGGGTGSVGGGRIYKGQKGEPGEVPY
VTGIRGRPGPMGPPGPPGHRGPHGNKGRPGLRGLPGFDGEPGIPGQPGEPGPPGPPSHPG
GLGAHMAQGMDSKTGPQHMLSGARGEAGARGPVGPNGSPGHPGPQGPAGEVGDPGHMGSP
GQRGPEGPPGKPGEDGEAGRAGNSGEVGFPGSSGPRGFPGTPGPPGLKGHRGHIGPLGLK
GEAGALGSKGATGPPGPMGAPGPMGPAGMPGERGRPGPGGVAGKRGMPGNIGKPGPLGPL
GLSGPAGYPGGPGMKGQPGPTGVRGPEGPQGQRGETGHQGRAGPVGLRGPMGTDGGPGTK
GPVGNLGPQGPGGHPGPSGPPGPQGSTGQPGIKGQGGDVGVPGFKGEAGPKGEPGPPGSQ
GVIGPQGEEGKRGTRGDPGSVGPPGPVGERGSPGNRGFPGADGLPGPKGAQGDRGISGPA
GPKGSLGDPGRPGEPGLPGARGLTGTPGVQGAEGKPGPLGPSGEDGRPGPAGSIGNRGPV
GTMGAPGPKGFSGDPGKTGEQGSPGVLGQRGPPGKDGEVGPAGPPGPPGPAGDRGEQGPP
GVNGFPGLPGNQGPPGESGKPGDQGIPGEIGPLGQIGPRGERGIPGERGELGASGLQGPK
GIPGAPGPDGPKGSPGPPGTLGDVGPPGLQGMPGERGISGPPGPKGDRGAIGEKGSEGTP
GNDGARGAPGPLGPVGPAGPSGEKGEPGPKGPAGPPGSRGTPGSRGDPGPIGAVGFTGPQ
GPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGAHGPPGPIGVSGLKGGRGTQGAPGPTGFP
GSAGKVGPPGPPGPVGEAGPQGAPGKEGPPGLRGDHGSPGRQGERGPAGPSGSPGDKGDP
GEDGPTGPDGPPGPAGTTGQRGIVGLPGQRGERGMPGLPGPAGPPGKQGSPGSTGDKGPP
GPVGVPGANGPRGDPGPDGPAGSDGPPGKDGGLGQRGDRGDSGPEGLIGPQGLPGTPGPV
GAPGSPGKRGEPGSRGPQGPPGAAGKRGLVGPQGPRGDKGDLGDHGERGQKGHRGYTGLQ
GLPGPPGTTGEQGAPGIVGPGGPRGPPGPIGPPGKEGYMGQPGPMGPPGTRGLSGEIGPQ
GPPGEPGPTGPPGPPGPPVAAMDDLFGGPQDYDSGPPPPPEFSEDEALPNSNSSTIIPVD
PGVQATLKALSSQIDSMKSPDGSRKHPARTCDDLKRCYPMKTSGEYWVDPNQGSSEDAIK
VHCNMDTGETCISANPASIPRKVWWTASRNKPVWFGADINGGTHFTYGNRDQPANSVAVQ
MTFIRLLSKEASQTVTYHCKNSVGYNDAKAGNLKKAVILKGSNDLELKAEGNNRFRYTVL
EDSCSQASSSWGKTVFEYRTQKTARLPIVDLAPVDIGGPSQEFGIDIGPVCFL
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atgatgatctgtgtgcgtttaaggattttggtttttctggcggtctcgcaggttctgatt
gtgacatgtcaggatgcagacagcgacggcagctgcgaacaggacggccagatctacacc
aacaacgacatctggaagccgacgccgtgccggatctgcgtttgcgacaaagggaacgtt
ctgtgcgacgacattcattgcgacgacgtgaccaactgtgagaagatgtacatcccggag
ggcgagtgctgccccgtctgccagggcgactcgcccagcaccggcggcggcgggacgggg
agcgtcggcggaggcagaatttacaagggtcagaaaggagaaccaggagaggttccttat
gtgacggggatccggggccgacccggacccatggggccgccggggccaccaggacataga
ggacctcacggaaacaaaggaagacccggactgcgaggactgccagggttcgatggagag
ccgggtattccgggccagcctggagaaccgggacctccgggtcctccgtcacacccgggg
gggctgggagcgcatatggctcaaggaatggattcaaaaacaggaccgcagcacatgctg
agtggagccaggggagaagctggagccagaggaccagtcggaccaaacggctcacctggt
caccctggaccacaaggacctgccggagaagttggtgatcctggtcacatgggttcgccg
ggacagaggggaccggagggccctccaggaaaaccaggcgaagatggagaagctggtaga
gcaggaaattctggagaagttggattccctggatcatcgggaccaagaggatttcctgga
acgcccggtccgcccggcctgaaggggcatcgaggtcacattgggcctcttggtctaaag
ggtgaagctggagctttgggatccaagggggctacaggaccgcctggcccgatgggagca
cctggacccatgggtcctgctgggatgcctggcgaaagaggccggcctggacctggtgga
gtggcaggaaagcgtggcatgcctggcaacattgggaaacctggtccactgggcccgttg
ggtctcagcggtcctgccgggtatccaggaggcccgggaatgaagggtcagcctggtccc
acaggggtcagaggtccagaaggccctcagggtcagagaggagagaccggtcaccaaggc
agagctggaccagttggactgaggggacccatgggtacagatggaggcccaggaaccaaa
ggaccagtgggtaacttgggtccacaaggtcctggaggccaccctggaccgtccggccca
ccaggaccccagggaagcaccggtcagcctggcattaaaggacaggggggagacgttgga
gttcccggtttcaaaggtgaagcaggaccaaagggagaaccgggtccaccaggttcccag
ggagtgataggacctcagggtgaggaaggaaagcgaggaacacgtggagatcctggctcg
gtgggccctccagggcccgtcggtgagagaggttctcctggcaacagaggtttccctggt
gctgatggcctgccaggacctaagggtgctcaaggagatcgtggcatttctggccctgcg
ggccctaaaggttctctaggggacccgggccgtccaggggagcctggtctaccaggtgca
aggggtcttacaggtaccccaggagtccagggggcagaaggcaagccagggccactgggt
ccatctggtgaagacggacgcccaggcccggcaggatcgattggtaataggggcccggtg
ggcaccatgggggccccgggccccaaaggtttcagtggtgatcctggaaaaacaggcgaa
caaggatctccaggagtactcggtcaaagaggacctccaggaaaagatggagaagttggc
cctgcaggcccgcccggcccgcctggccccgcaggagacagaggagagcaggggccacct
ggcgtgaacggattcccgggtttgccaggaaaccaaggaccccctggagagtctggtaaa
ccaggtgaccaaggcattcctggagaaattggtccacttggtcaaatcggaccgaggggc
gagcgaggaatccctggagagagaggggaactgggtgcatccggcctgcagggacctaaa
gggattcctggagcgccaggtccagacggaccaaagggcagcccgggtccgcctggcact
ctgggagatgtcggtcctcctggtcttcaagggatgccaggagagcgaggaatctctgga
cctcctgggcccaagggtgatcggggagccatcggtgaaaagggatcagaaggtacgccc
ggaaacgacggagcaagaggagcgcccggccccctcggcccagtgggacccgccggaccc
agcggagaaaagggggaacctggacccaaagggccagccggacctccaggatccagagga
actccgggatcgaggggtgaccccggtccgatcggcgctgttgggttcaccggaccacag
ggtcccgatggtcaacctggagtgaagggagaacccggagagcccggtcagaaaggagat
gctggttctccaggaccgcagggtctggccggagcccacggacctccgggtccaattggt
gtttctgggctgaaaggaggtcgaggaacgcagggtgcaccgggccccactggtttccct
ggatctgcaggaaaagtcggaccgccgggcccacctggcccagtcggggaagcagggccc
cagggagccccgggcaaagagggccccccaggactccgcggggaccacgggtcgcctggg
aggcaaggcgagcgcggcccggcggggccctcagggagccccggggacaagggcgaccct
ggagaggacggccccacgggtcctgatggccctccgggtccggctggaaccacaggacag
agaggcatcgtgggtcttcctgggcagagaggagaacggggcatgccgggtcttccagga
ccagcagggcctccagggaagcagggctccccaggatcaacgggagataaaggccctcca
ggtccggtcggcgttcccggcgctaacggaccccgtggcgatcccggtccggatggcccg
gccggatccgacggacctccagggaaggacggcggtctgggtcagaggggagaccgagga
gattctggtccggagggtttgattggtccacaaggacttcctggaaccccgggacccgtc
ggtgccccgggttctccaggaaagagaggcgagcctggctcaagaggaccccaaggacca
cctggagcagctggaaaacgaggactggtgggaccacaaggaccgagaggagataagggt
gacctgggcgatcatggagagagaggacagaaaggacacagaggatacacgggtctgcag
ggtcttcctggacctccgggcacaactggagagcaaggagctcctgggatagtcggaccg
ggcgggccgaggggtcctcctgggcccatcgggcctcctggaaaggaggggtatatgggt
cagccgggcccgatgggacctccagggacacgaggactcagtggagaaattgggcctcag
ggccctccaggagaacccggacccaccggtcctcctgggcctccaggaccacccgtggcg
gctatggacgatctgtttggcggcccccaggattacgactccgggccccctcctcctcca
gagttcagtgaagacgaagccctgcccaacagcaactcctccaccatcatccccgtggac
ccgggcgtccaggcgaccttgaaggccctcagcagtcagatcgacagcatgaagagtccg
gacggcagcaggaagcatccggccaggacctgcgacgacctgaagaggtgctaccccatg
aagacgagcggtgagtactgggtggatccaaaccagggcagttcagaagatgccatcaag
gttcactgcaacatggacaccggagaaacctgcatctccgccaacccggccagcatacct
cgcaaagtgtggtggaccgcgtccaggaacaaacctgtgtggtttggagccgacatcaac
ggcgggacgcactttacctacggcaacagggatcagccggcgaactccgtggcggtgcag
atgaccttcatccgcctgctgtccaaggaggcgtctcagaccgtcacctaccactgcaag
aactccgtgggctacaacgacgccaaggcgggcaacctgaagaaagccgtgatcctcaaa
ggctccaacgacctggagctgaaagccgagggcaacaaccgcttcagatacacggtgctg
gaggactcctgttcgcaagcgtccagcagctggggcaagacagtgtttgagtacaggaca
cagaaaacagcgagacttcccatagtggatttggcccctgtggacattggtggccccagt
caagagttcggcatcgacatcgggccagtatgcttcttgtaa
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