Xenorhabdus nematophila AN6/1: XNC2_0375
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Entry
XNC2_0375 CDS
T03752
Symbol
rho
Name
(GenBank) transcription termination factor Rho; polarity suppressor
KO
K03628
transcription termination factor Rho
Organism
xnm
Xenorhabdus nematophila AN6/1
Pathway
xnm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xnm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XNC2_0375 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xnm03021
]
XNC2_0375 (rho)
03019 Messenger RNA biogenesis [BR:
xnm03019
]
XNC2_0375 (rho)
Transcription machinery [BR:
xnm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
XNC2_0375 (rho)
Messenger RNA biogenesis [BR:
xnm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
XNC2_0375 (rho)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
CEK21374
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All DBs
Position
I:317061..318320
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AA seq
419 aa
AA seq
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MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
FDKPENARSKILFENLTPLHANNRLRMERGNGSTEDLTARVLDLAAPIGRGQRGLIVAPP
KAGKTMLLQNIAANIAHNYPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQDELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNEEFFDFMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtatctgagttgattactctcggcgaaaat
atggggctggaaaatctggctcgtatgcgtaagcaagacatcattttctctattctcaaa
caacacgcgaaaagcggagaggatattttcggagatggtgtgctggagatattacaggat
ggatttggtttcctccgctcagcagacagctcctaccttgcaggtcccgatgatatctac
gtttctcctagtcaaatccgccgttttaaccttcgtaccggtgataccatttcagggaaa
atccgcccaccaaaagaaggtgaacgctattttgccctgctgaaagtcaatgaagttaac
tttgacaaacctgaaaatgctcgcagtaaaatcctgtttgaaaacttgactccgcttcat
gccaacaaccgtctgcgcatggaacgtggtaatggttctactgaagatttgactgcccgt
gtattggatttagctgctccgattggtcgtggtcaacgtggtttgattgttgctccgcca
aaagcaggcaagaccatgctgctgcaaaatattgcagctaacattgcccataactatcca
gactgtgttctgatggtgctgttgattgatgaacgcccagaagaagtaacagaaatgcag
cgtttggttaaaggtgaagtcattgcttcaacttttgatgagcccgcttcccgtcacgtt
caagtggctgaaatggtgatcgaaaaagcgaagcgtttagttgagcataaaaaagacgtt
attatcctgctggactccattactcgtctggctcgtgcatataacaccgttgttcctgca
tctggtaaggtgctgacgggtggtgtagatgcgaatgcgttgcatcgaccaaaacgtttc
tttggtgctgcacgtaatgttgaagaaggcggtagcctgactatcatcgccactgcgctg
gttgatactggctccaaaatggatgaagttatttacgaagaatttaaaggtacaggtaat
atggaattgcacctgtcccgtaagattgctgaaaaacgcgttttccctgctattgattac
aatcgttccggaacacgtaaagaagagctgcttactacacaggatgagctacagaagatg
tggatcctgcgtaaaattattcacccaatgggtgaaattgatgcgatggaattccttatc
aacaaactggctatgacaaaaacaaacgaagaatttttcgactttatgaaacgttcatag
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