Xanthomonas oryzae pv. oryzicola BLS256: XOC_2085
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Entry
XOC_2085 CDS
T01873
Symbol
ligD
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xor
Xanthomonas oryzae pv. oryzicola BLS256
Brite
KEGG Orthology (KO) [BR:
xor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XOC_2085 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xor03400
]
XOC_2085 (ligD)
Enzymes [BR:
xor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XOC_2085 (ligD)
DNA repair and recombination proteins [BR:
xor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XOC_2085 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AEQ96230
UniProt:
G7TCQ3
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All DBs
Position
2081593..2082585
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AA seq
330 aa
AA seq
DB search
MSLSSARRSPKRDGNQSEIRATQAPTRAATRATRKSAVAAPAADAMPTLSSPTKLIYPDI
RATKRDVWDYYHAVMDHLLPQIVGRLLSIIRCPSGAVKPCFFQKHHTAGLERVSSVKLTE
ETAANAYYLVVEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVR
RAANDIRKLLAQVELESFLRVSGGKGLHVVAPLNPGCDWKVTKRFAKGFADALAQAEPQR
FIATATKRIFVDYLRNGRGATAVASYSLRGRPGAPVALPLAWSDLSKLQRADAFTLRDAP
EKLRRRCKDPWAGMDRIQQNLARWAEQDED
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
gtgtcactctcttctgccaggcgttcgccgaagcgtgatgggaaccaatccgagatcagg
gccacgcaggcaccgacgcgtgcagcaacgcgcgctacgcgcaaatcggcagttgcggca
cctgctgcggacgcgatgccgacgctgtccagcccgaccaagctgatctacccggacatc
cgcgcgaccaagcgcgacgtctgggactactaccacgccgtaatggatcacctgttaccg
cagatcgtgggccggctgctgtcgatcatccgctgcccgagcggagcggtaaagccgtgc
tttttccagaaacaccacacggccggccttgagcgcgtaagctcggtcaagctgaccgaa
gagaccgctgccaacgcgtattacctcgttgtcgaagatgcacccggcctgctggaactg
gtgcaattcaatgcgctggaattccatccctggggctcgcatgcggatcgcccggatgtt
gccgaccgtgtggtattcgatctcgatccgggtccggacgtgccgtttgccgaagtcaga
cgtgcggcgaacgatatacgcaagttgttggcgcaagtggagctggaatcgttcctgcgc
gtctccggcggcaaaggtctgcacgtggtggcacccttgaatccgggctgcgattggaag
gtcaccaagcgcttcgccaagggcttcgccgatgcgctcgcgcaggccgagccgcagcga
ttcatcgccaccgccaccaagcgcatcttcgtcgactatctgcgcaacggccgcggcgct
accgcagtagcgtcctattcactgcgtggccgaccaggcgcgccggttgcgttgccgctg
gcctggtcggacttgtccaagctgcaacgggcggatgccttcaccttgcgcgatgcgccg
gagaagctgcgccgccgttgcaaggatccgtgggcaggcatggaccgcatccagcaaaac
ctggcgcgatgggcggagcaggatgaggactga
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