Xanthomonas oryzae pv. oryzicola CFBP7342: BE73_09895
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Entry
BE73_09895 CDS
T03868
Name
(GenBank) DNA polymerase LigD, polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xoz
Xanthomonas oryzae pv. oryzicola CFBP7342
Brite
KEGG Orthology (KO) [BR:
xoz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BE73_09895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xoz03400
]
BE73_09895
Enzymes [BR:
xoz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BE73_09895
DNA repair and recombination proteins [BR:
xoz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BE73_09895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AJQ87360
LinkDB
All DBs
Position
2070928..2071920
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AA seq
330 aa
AA seq
DB search
MSLSSARRSPKRDGNQSEIRATQAPTRAATRATRKSAVAAPAADAMPTLSSPTKLIYPDI
RATKRDVWDYYHAVMDHLLPQIVGRLLSIIRCPSGAVKPCFFQKHHTAGLERVSSVKLTE
ETAANAYYLVVEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVR
RAANDIRKLLAQVELESFLRVSGGKGLHVVAPLNPGCDWEVTKRFAKGFADALAQAEPQR
FIATATKRIFVDYLRNGRGATAVASYSLRGRPGAPVALPLAWSDLSKLQRADAFTLRDAP
EKLRRRCKDPWAGMDRIQQNLARWAEQDED
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
gtgtcactctcttctgccaggcgttcgccgaagcgtgatgggaaccaatccgagatcagg
gccacgcaggcaccgacgcgtgcagcaacgcgcgctacgcgcaaatcggcagttgcggca
cctgctgcggacgcgatgccgacgctgtccagcccgaccaagctgatctacccggacatc
cgcgcgaccaagcgcgacgtctgggactactaccacgccgtaatggatcacctgttaccg
cagatcgtgggccggctgctgtcgatcatccgctgcccgagcggagcggtaaagccgtgc
tttttccagaaacaccacacggccggccttgagcgcgtaagctcggtcaagctgaccgaa
gagaccgctgccaacgcgtattacctcgttgtcgaagatgcacccggcctgctggaactg
gtgcaattcaatgcgctggaattccatccctggggctcgcatgcggatcgcccggatgtt
gccgaccgtgtggtattcgatctcgatccgggtccggacgtgccgtttgccgaagtcaga
cgtgcggcgaacgatatacgcaagttgttggcgcaagtggagctggaatcgttcctgcgc
gtctccggcggcaaaggtctgcacgtggtggcacccttgaatccgggctgcgattgggag
gtcaccaagcgcttcgccaagggcttcgccgatgcgctcgcgcaggccgagccgcagcga
ttcatcgccaccgccaccaagcgcatcttcgtcgactatctgcgcaacggccgcggcgct
accgcagtggcgtcctattcactgcgtggccgaccaggcgcgccggttgcgttgccgctg
gcctggtcggacttgtccaagctgcaacgggcggatgccttcaccttgcgcgatgcgccg
gagaagctgcgccgccgttgcaaggatccgtgggcaggcatggaccgcatccagcaaaac
ctggcgcgatgggcggagcaggatgaggactga
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