KEGG   Xanthomonas perforans: BJD13_04330
Entry
BJD13_04330       CDS       T04778                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xpe  Xanthomonas perforans
Pathway
xpe03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xpe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BJD13_04330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xpe03400]
    BJD13_04330
Enzymes [BR:xpe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BJD13_04330
DNA repair and recombination proteins [BR:xpe03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BJD13_04330
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: APO98389
UniProt: A0A0G8UW13
LinkDB
Position
622678..625296
AA seq 872 aa
MSLSEYRRKRSFNKTREPEPGKALPPGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYASFEGEIPKGEYGGGHVAQFDHGVWATAGDPEAQLAK
GHLRFELFGNKLKGGWHLVRSGKPARQPQWLLFKDDDAYAGTLEADDLLADVAAAPAEDV
RRAGAGKTQRKALTTVPPPAAKRRGTWAKQALALSNARRAEMEDAPFAPQLAKLGQSPPE
GAQWLHEIKWDGYRILATVTNGKVRLWSRNALEWTDKTPEIADAIRSLGLRSAQIDGELI
AGRGTKDDFNLLQATLSGERQVPLALAVFDLLHVDGVDISEAPLRERKRLLQQVLEAAPH
THLAYSSHVEGDGTEAFRVAGQQHFEGIISKRADRPYRDGRSDDWRKTKQLASQEYAVVG
YTAPKGSRSGFGSLLLAAPDPVHGWLYVGRVGSGFSDALMREVTPQLEGGGRKPTAHIPT
EDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASFKALRPDKRIADLADSDAGNGPATPS
SARRSATTRAAKDAATQAPKRAATRATAPARKSAVATPSSAALPTLSSPTKLIYPDIRAT
KGDVWDYYQAVMDHLLPQIVGRPLSIIRCPSGAEKPCFFQKHHTAGLERVSSVKLTEETG
TNAYYLVVEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVKRAA
NDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQAQPQRFIA
TATKRLRNKRIFVDYLRNGRGATAVASYSLRGRPGAPVALPLAWSDLSKLQRADAFTLRD
VPEKLRRRRKDPWADMDGIRQNLARWAEQDEE
NT seq 2619 nt   +upstreamnt  +downstreamnt
atgagcctgagcgaatatcgccgcaagcgcagctttaacaagacccgcgagccggagccg
ggcaaggccctgccgccggggcagcgtgcgatcttcgtggtgcaactgcaccacgccagc
cgccgccattacgactttcgcctgcaggtgggcgatgcgctcaagagctgggcggtgccg
aagggtcccagttacgaccccaaggtcaagcgcatggcagtggaggtggaagaccacccg
gtcgattacgccagtttcgagggcgagattcccaaaggcgaatacggcggcgggcatgtg
gcgcagttcgatcatggcgtgtgggccaccgcgggcgaccccgaagcgcaattagccaag
ggacatctgcgctttgagttgttcggcaacaagctcaagggcggttggcatctggtgcgc
tcgggcaagccggcgcggcagccgcagtggctgttgttcaaggacgacgatgcctacgcc
ggcacgttggaggccgatgacctgctggccgacgtcgctgccgcgcctgccgaggatgta
cgccgcgcaggcgccggcaagacccagcgcaaggcgctgacgaccgtgccgccgccggcg
gcgaagaggcgtggtacctgggcgaaacaggcgctggcgctgagcaatgcacgtcgcgcc
gagatggaagatgccccgtttgcaccgcagctggccaagctggggcagtccccgccagaa
ggggcgcagtggctgcatgaaatcaaatgggacggttatcgcatcctggccaccgtgacc
aacggcaaggtgaggctatggtcgcgcaatgcattggagtggaccgacaagacgccggaa
attgccgatgccatccggtcgctgggcctgcgcagcgcgcagatcgatggcgaactgatc
gccggacgcggcaccaaggacgacttcaacctgctgcaggccaccttgtccggcgagcgc
caggtgccgctggcgctggcggtattcgacctgttgcatgtggacggggtggacatcagc
gaggcgccgctgcgcgaacgcaagcggctgttgcagcaggtgctggaggctgcacctcac
acgcatctggcctatagctcgcacgtcgaaggcgatggcaccgaggcgttccgggtggcc
gggcaacagcacttcgaaggcatcatttccaaacgcgcagatcgcccgtatcgcgatggg
cgtagcgacgattggcgcaagaccaagcaactggccagccaggagtatgcggtggtcggc
tacaccgcgcccaagggcagccgcagtggcttcggctcgctgttgctggccgcgccggat
ccggtgcatggctggttgtacgtgggccgtgtgggctccgggttctccgatgccttgatg
cgcgaggtcaccccgcaactggaaggtggcgggcgcaaacccaccgcgcatattcccacc
gaagacaccgacctgcgcggcgccacctggtttgcgccgcgctttgtggtggaggtgttc
tatcgcggcattggtgggcaacagttgttgcgccaggcatcgttcaaggcgctgcgcccg
gataagcgcatcgccgatctggccgacagcgatgccggaaatggcccggctacaccgtcc
tctgccaggcgttcggcaacaacgcgtgctgccaaagacgcagcaacgcaggcgcccaaa
cgtgcagcgacgcgggcaacagcgcctgcgcgcaaatctgcggttgccacaccttcctcg
gctgcgctgccgacgctgtccagcccgaccaagctgatctacccggatatccgcgcgacc
aagggcgatgtctgggactattaccaggcggtgatggaccacctgttgccgcagatcgtg
ggacggccgctgtccatcatccgctgccccagcggcgcggaaaaaccgtgttttttccag
aagcaccatactgccggcctcgagcgagtgagctcggtcaagctgaccgaagagaccgga
accaacgcgtattacctggtggtcgaagacgcgcctggcctgctggaactggtgcaattc
aatgcgctggaattccacccctggggctcgcatgcggaccgcccggatgtggccgaccgg
gtggtcttcgatctcgatccgggcccggacgtgccgtttgccgaggtcaaacgtgcggcc
aacgatattcgcaagcttttggcgcagctggagctggaatcgttcttgcgtgtgtctggc
ggcaaggggctgcacgtggtggtgcccctgaaccccggctgcgattgggaggtgaccaag
cgtttcgccaagggatttgccgatgccctggcacaggcgcagccgcagcggttcatcgcc
actgccaccaagcgactgcgcaacaagcgcatcttcgtggactacctgcgcaacggccgt
ggcgccactgcggttgcgtcctattcgttacgcggccgcccgggggcgccagtcgccttg
ccgctggcgtggtcggacctgtccaagctgcagcgcgccgatgcattcactttgcgcgat
gtcccggagaagctgcgccgtcggcgcaaggatccctgggcagacatggacggcatccgg
caaaacctggcgcgctgggcagagcaggacgaggagtga

DBGET integrated database retrieval system