Xanthomonas perforans: BJD13_04330
Help
Entry
BJD13_04330 CDS
T04778
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xpe
Xanthomonas perforans
Pathway
xpe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BJD13_04330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xpe03400
]
BJD13_04330
Enzymes [BR:
xpe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BJD13_04330
DNA repair and recombination proteins [BR:
xpe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BJD13_04330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
APO98389
UniProt:
A0A0G8UW13
LinkDB
All DBs
Position
622678..625296
Genome browser
AA seq
872 aa
AA seq
DB search
MSLSEYRRKRSFNKTREPEPGKALPPGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYASFEGEIPKGEYGGGHVAQFDHGVWATAGDPEAQLAK
GHLRFELFGNKLKGGWHLVRSGKPARQPQWLLFKDDDAYAGTLEADDLLADVAAAPAEDV
RRAGAGKTQRKALTTVPPPAAKRRGTWAKQALALSNARRAEMEDAPFAPQLAKLGQSPPE
GAQWLHEIKWDGYRILATVTNGKVRLWSRNALEWTDKTPEIADAIRSLGLRSAQIDGELI
AGRGTKDDFNLLQATLSGERQVPLALAVFDLLHVDGVDISEAPLRERKRLLQQVLEAAPH
THLAYSSHVEGDGTEAFRVAGQQHFEGIISKRADRPYRDGRSDDWRKTKQLASQEYAVVG
YTAPKGSRSGFGSLLLAAPDPVHGWLYVGRVGSGFSDALMREVTPQLEGGGRKPTAHIPT
EDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASFKALRPDKRIADLADSDAGNGPATPS
SARRSATTRAAKDAATQAPKRAATRATAPARKSAVATPSSAALPTLSSPTKLIYPDIRAT
KGDVWDYYQAVMDHLLPQIVGRPLSIIRCPSGAEKPCFFQKHHTAGLERVSSVKLTEETG
TNAYYLVVEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVKRAA
NDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQAQPQRFIA
TATKRLRNKRIFVDYLRNGRGATAVASYSLRGRPGAPVALPLAWSDLSKLQRADAFTLRD
VPEKLRRRRKDPWADMDGIRQNLARWAEQDEE
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgagcgaatatcgccgcaagcgcagctttaacaagacccgcgagccggagccg
ggcaaggccctgccgccggggcagcgtgcgatcttcgtggtgcaactgcaccacgccagc
cgccgccattacgactttcgcctgcaggtgggcgatgcgctcaagagctgggcggtgccg
aagggtcccagttacgaccccaaggtcaagcgcatggcagtggaggtggaagaccacccg
gtcgattacgccagtttcgagggcgagattcccaaaggcgaatacggcggcgggcatgtg
gcgcagttcgatcatggcgtgtgggccaccgcgggcgaccccgaagcgcaattagccaag
ggacatctgcgctttgagttgttcggcaacaagctcaagggcggttggcatctggtgcgc
tcgggcaagccggcgcggcagccgcagtggctgttgttcaaggacgacgatgcctacgcc
ggcacgttggaggccgatgacctgctggccgacgtcgctgccgcgcctgccgaggatgta
cgccgcgcaggcgccggcaagacccagcgcaaggcgctgacgaccgtgccgccgccggcg
gcgaagaggcgtggtacctgggcgaaacaggcgctggcgctgagcaatgcacgtcgcgcc
gagatggaagatgccccgtttgcaccgcagctggccaagctggggcagtccccgccagaa
ggggcgcagtggctgcatgaaatcaaatgggacggttatcgcatcctggccaccgtgacc
aacggcaaggtgaggctatggtcgcgcaatgcattggagtggaccgacaagacgccggaa
attgccgatgccatccggtcgctgggcctgcgcagcgcgcagatcgatggcgaactgatc
gccggacgcggcaccaaggacgacttcaacctgctgcaggccaccttgtccggcgagcgc
caggtgccgctggcgctggcggtattcgacctgttgcatgtggacggggtggacatcagc
gaggcgccgctgcgcgaacgcaagcggctgttgcagcaggtgctggaggctgcacctcac
acgcatctggcctatagctcgcacgtcgaaggcgatggcaccgaggcgttccgggtggcc
gggcaacagcacttcgaaggcatcatttccaaacgcgcagatcgcccgtatcgcgatggg
cgtagcgacgattggcgcaagaccaagcaactggccagccaggagtatgcggtggtcggc
tacaccgcgcccaagggcagccgcagtggcttcggctcgctgttgctggccgcgccggat
ccggtgcatggctggttgtacgtgggccgtgtgggctccgggttctccgatgccttgatg
cgcgaggtcaccccgcaactggaaggtggcgggcgcaaacccaccgcgcatattcccacc
gaagacaccgacctgcgcggcgccacctggtttgcgccgcgctttgtggtggaggtgttc
tatcgcggcattggtgggcaacagttgttgcgccaggcatcgttcaaggcgctgcgcccg
gataagcgcatcgccgatctggccgacagcgatgccggaaatggcccggctacaccgtcc
tctgccaggcgttcggcaacaacgcgtgctgccaaagacgcagcaacgcaggcgcccaaa
cgtgcagcgacgcgggcaacagcgcctgcgcgcaaatctgcggttgccacaccttcctcg
gctgcgctgccgacgctgtccagcccgaccaagctgatctacccggatatccgcgcgacc
aagggcgatgtctgggactattaccaggcggtgatggaccacctgttgccgcagatcgtg
ggacggccgctgtccatcatccgctgccccagcggcgcggaaaaaccgtgttttttccag
aagcaccatactgccggcctcgagcgagtgagctcggtcaagctgaccgaagagaccgga
accaacgcgtattacctggtggtcgaagacgcgcctggcctgctggaactggtgcaattc
aatgcgctggaattccacccctggggctcgcatgcggaccgcccggatgtggccgaccgg
gtggtcttcgatctcgatccgggcccggacgtgccgtttgccgaggtcaaacgtgcggcc
aacgatattcgcaagcttttggcgcagctggagctggaatcgttcttgcgtgtgtctggc
ggcaaggggctgcacgtggtggtgcccctgaaccccggctgcgattgggaggtgaccaag
cgtttcgccaagggatttgccgatgccctggcacaggcgcagccgcagcggttcatcgcc
actgccaccaagcgactgcgcaacaagcgcatcttcgtggactacctgcgcaacggccgt
ggcgccactgcggttgcgtcctattcgttacgcggccgcccgggggcgccagtcgccttg
ccgctggcgtggtcggacctgtccaagctgcagcgcgccgatgcattcactttgcgcgat
gtcccggagaagctgcgccgtcggcgcaaggatccctgggcagacatggacggcatccgg
caaaacctggcgcgctgggcagagcaggacgaggagtga
DBGET
integrated database retrieval system