Xanthomonas phaseoli: XppCFBP6546_21045
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Entry
XppCFBP6546_21045 CDS
T05156
Symbol
XppCFBP6546P_21045
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
xph
Xanthomonas phaseoli
Pathway
xph02020
Two-component system
xph02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xph00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
XppCFBP6546_21045 (XppCFBP6546P_21045)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
XppCFBP6546_21045 (XppCFBP6546P_21045)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xph03021
]
XppCFBP6546_21045 (XppCFBP6546P_21045)
Transcription machinery [BR:
xph03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
XppCFBP6546_21045 (XppCFBP6546P_21045)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_Crp_2
HTH_AsnC-type
HTH_IclR
HTH_23
Sigma70_r4
HTH_11
Sigma70_r4_2
HTH_Tnp_ISL3
MarR
HTH_36
Motif
Other DBs
NCBI-ProteinID:
ATS31829
LinkDB
All DBs
Position
2972490..2973929
Genome browser
AA seq
479 aa
AA seq
DB search
MKARLQTSLGQQLVMTPQLRQAIKLLQMSTTELEVEIAEAVETNPLLEWADEAAHAASDI
AVDASPSASAEAPQREEVAPAERDEDWSQDELQWTGSGSGGSFDDDESGDAAERVAESET
LADHLLWQLHLSPLSPRDRQIGAMLIDALDEDGYLREPLSAILETLALGAAVDEADVLTV
LHQIQRFDPVGVGARSLGECLALQLGVLDADTPGRELALQIVAGPLERLPRSGVTGLAHE
LKRSTADVEQAVQLVRSLDPRPGKQVGDLSQDTYVVPDCVIWRQRGVWRTALAGRAQPKV
TIHRGYENLIRSCGESDAGYLRGQLQEARWLLKSLEARGETLLRVVRCLLEHQAGFLEFG
AQALRPLTLREIAGELGLHESTISRAIARKYVRTPRGTIALRAFFASGIDTDSGGEASST
AIQAMIRRLIDAENPRKPLSDAKLADLLKTSGVPVARRTVAKYREAMNISASHERVRIA
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcccggctccagacatcgctaggacagcagttggtcatgacgccgcaactgcgt
caggcgatcaagctattgcagatgtccaccaccgagctggaagtggaaatcgccgaggcc
gttgaaaccaatccgctgctggagtgggccgacgaagccgcgcatgcggccagcgacatc
gcggtggacgcctcgccgtccgcgtccgccgaagcacctcagcgcgaagaagtcgcgcct
gccgagcgcgacgaggattggtcgcaggacgaactgcagtggaccggctcgggcagcggc
ggcagcttcgacgacgacgagtccggcgatgccgcagagcgcgtggccgaatccgaaaca
ctggccgaccacctcttgtggcagctgcatctgtcgccgctgtcgccgcgcgaccgccag
atcggcgcgatgctgatcgacgcgctcgacgaagacggctacctgcgcgaaccgctgtcg
gccattctcgaaaccctggcgctgggcgcagcggtcgacgaggccgatgtgctcaccgtc
ctgcatcagatccaacgcttcgacccggtgggcgtgggcgcgcgctccctgggcgaatgc
ctggcgttgcagctgggggtgctcgatgcggacacgcctggccgggagctggcgctgcag
atcgttgccggcccgctggaacggctgccgcgcagcggcgtgaccgggctggcgcacgag
ctcaagcgctccactgccgatgtggaacaggcggtgcagctggtgcgctcgctggacccg
cgcccaggcaaacaggtcggcgacctgtcacaggacacctatgtcgtgcccgactgcgtg
atctggcgccagcgcggggtctggcggaccgcgctggccggccgcgcgcagcccaaggtc
accatccaccgcggctacgagaacctgatccgcagttgcggcgagtccgacgccggctac
ctgcgcggccagttgcaggaggcacgctggttgctcaagagcctggaggcgcgcggcgag
accctgctgcgggtggtgcgctgcctgctggaacaccaggccgggttcctggagttcggc
gcgcaggccttgcgcccgttgacgctgcgcgaaatcgcaggcgagctcgggctgcacgaa
tccaccatttcccgcgcgatcgcccgcaaatacgtgcgcaccccgcgcgggaccatcgcg
ctgcgcgcgttcttcgcctccggcatcgacaccgacagcggcggcgaggcctccagcacc
gccatccaggccatgatccggcgcctgatcgatgcggaaaacccgcgcaaaccgctctcc
gacgccaaactggccgacctgctgaaaacatccggcgtaccagtggcgcggcgcaccgtt
gcgaagtatcgtgaggccatgaacatttccgcctcccacgaacgcgtgcgcatcgcctga
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