Xanthomonas sacchari: SB85_13470
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Entry
SB85_13470 CDS
T03566
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xsa
Xanthomonas sacchari
Pathway
xsa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SB85_13470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xsa03400
]
SB85_13470
Enzymes [BR:
xsa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SB85_13470
DNA repair and recombination proteins [BR:
xsa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SB85_13470
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AJC46611
LinkDB
All DBs
Position
complement(3247532..3250171)
Genome browser
AA seq
879 aa
AA seq
DB search
MSLADYRRKRRFDKTREPEPGKPVPAGQRPIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPLDYATFEGEIPQGEYGGGHVAQFDRGVWSCADDPETQLAK
GHLRFELFGDKLKGGWHLVRSGKPARQPQWLLFKDDDAFAGDLEADDLLADVTPAPAQDV
TRAGAGKPNKRKATVVAAPVRKGRRTNWAKLAQALPGAVSAAAPDGPFAPQLARLGDAPP
QGAQWIHEIKWDGYRILATVADGVVRLWSRNAIEWTDRIPEIRDAIAALGLRSAALDGEL
IAGKGTKEDFNLLQAVLSGERQGTLALALFDLLHLDGIDIAAAPLSARKALLQRLLQGAD
AHLAFSSHIDGDGDAAFQLAGAQHFEGIVSKRADRGYHGGRSDDWRKTKQLRSDEFAVVG
YTAPKGSRSGFGALLLARPDPEHGWLYVGRVGSGFSDALLRELTALIGKAGSATPSVHVP
TTETDLRSARWFAPRFVVEVFYRGIGGQQLLRQTSLKAVRPDKDITDLGDADASAPRAAA
ARVTPAARKAKTDKADKTAKAAKATRTAKAANVAKAGSGRRDVASAGTARTPPTLSSPGR
VVFPDIGATKREVWDYYSAVMDHLLPEIAGRPLSIIRCPAGAERACFFQKHHTAGLELVS
SVRLKEESGTQAEYLVVEDAAGLLELVQFNALEFHPWGAHAASPERADRVVFDLDPGPDV
PFAEVKRAATDIRKLLAQLDLESFLRVSGGKGLHVVVPLAPGCDWGLTKRFAHGFADALA
QSQPERFLATASKRLRNQRIFVDYLRNGRGATAVASYSLRARAGAPVAMPLAWSDLPKLQ
RGDAFKLRDVPAKLKRRRKDPWAGIDALKQNLSRWAEAE
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcgccgactaccgccgcaagcgccgcttcgacaagacccgcgagccggagccg
ggcaagccggtgccggcggggcagcggccgatcttcgtcgtgcaactgcaccacgccagc
cgtcgccattacgatttccgcctgcaggtgggcgatgcgctgaagagttgggccgtgccg
aaggggccgagctacgaccccaaggtcaagcgcatggccgtggaagtggaagaccatccg
ctggactacgccacgttcgagggcgagatcccgcagggcgaatacggcggtgggcatgtg
gcccagttcgatcgcggcgtatggagctgcgcggacgaccccgagacgcaactggccaag
ggccatctgcgcttcgagttgttcggcgacaagctcaagggcggctggcacctggtgcgc
tccggcaagccggcgcggcagccgcagtggctgctgttcaaggacgacgacgccttcgcc
ggcgatctggaggccgacgacctgctggccgacgtcaccccggcgccggcgcaggacgtc
acgcgcgccggcgccggcaaaccgaacaaacgcaaggccacggtcgtcgccgcaccggtg
cgcaagggccgccggacgaactgggccaagctcgcccaggcgctgcccggcgcggtgtca
gcggcggcgccggacgggccgttcgcgccgcagctggcccggcttggcgacgcgccgcca
cagggcgcgcagtggatccacgagatcaagtgggacggctaccggatcctggccaccgtc
gccgacggcgtggtgcggctgtggtcgcgcaacgcgatcgagtggaccgacaggattccc
gagatccgcgacgccatcgccgcgctgggcctgcgctcggcggcgctggatggcgaattg
atcgccggcaagggcaccaaggaggacttcaacctgctgcaggcagtgctgtccggcgag
cgccagggcacgctggcgctggccctgttcgacctgctgcacctggacggcatcgacatc
gccgccgcaccgctgtccgcgcgcaaggcgttgttgcagcggctgctgcagggcgccgat
gcgcacctggccttcagctcgcacatcgacggcgacggcgacgccgcattccagctcgcc
ggcgcgcagcacttcgagggtatcgtctccaagcgcgccgaccgcggctaccacggcggc
cgcagcgacgactggcgcaagaccaagcagctgcgctctgacgaattcgcggtggtcggc
tacaccgcacccaagggcagccgcagcggcttcggcgcgttgctgctggcgcggccggat
cccgaacatggctggctgtacgtcgggcgggtcggctccggcttctccgacgcgctgctg
cgcgaactgaccgcgctgatcggcaaggccggcagcgccacgcccagcgtgcacgtgccg
accaccgagaccgacctgcgcagcgcgcgctggttcgcgccgcgcttcgtggtggaggtg
ttctaccgcggcatcggcggacagcagttgctgcgccagacctcgctgaaggcggtgcgt
ccggacaaggacatcaccgacttgggcgatgccgacgcatcggcaccgcgcgcggcggcg
gcgcgggtgacgccggcggccaggaaagccaaaacagataaagcagacaagacggccaaa
gccgctaaagcgaccagaacggcgaaagccgcgaacgtggcgaaggccggaagcggcagg
cgagacgtcgcgagcgcaggcaccgcgcgcacgccgccgacgctgtccagcccgggccgc
gtggtcttccccgacatcggcgcgaccaagcgcgaggtctgggactactacagcgcggtg
atggatcacctgctgccggagatcgccggtcgcccgctgtcgatcatccgctgccccgcc
ggtgccgaacgcgcgtgcttcttccagaagcaccacaccgccgggctggaattggtgtcg
tcggtgcggttgaaggaagaaagcggaacccaggcggagtacctggtggtcgaggatgcg
gccgggctgctggagctggtgcagttcaatgcattggagtttcacccgtggggcgcgcat
gccgcgtccccggagcgtgccgaccgcgtggtgttcgacctggatccggggccggatgtg
cccttcgccgaggtcaagcgcgcggccaccgacatccgcaaactgctcgcgcaactggac
ctggagtcgttcctgcgcgtgtccggcggcaagggcctgcacgtggtggtgccgctggcg
ccgggctgcgactggggcctgaccaagcgcttcgcccacggcttcgccgacgcgctggcg
cagtcgcaacccgagcgcttcctcgccaccgccagcaagcgcctgcgcaatcagcgcatc
ttcgtcgactatttgcgcaatggccgcggcgccaccgcggtggcctcgtattcgctacgc
gcccgcgctggcgcgccggtggcgatgccgctggcctggagcgacctgcccaagctgcaa
cgcggcgacgccttcaagctgcgcgacgtccctgccaagctgaaacggcgacgcaaggat
ccctgggccggcatcgacgcgctgaagcagaacctgtcgcgctgggccgaagcggagtga
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