Xenopus tropicalis (tropical clawed frog): 100127553
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Entry
100127553 CDS
T01011
Symbol
limch1
Name
(RefSeq) LIM and calponin homology domains-containing protein 1 isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
xtr04990
]
100127553 (limch1)
Domain-containing proteins not elsewhere classified [BR:
xtr04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
100127553 (limch1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
100127553
NCBI-ProteinID:
XP_004911274
Xenbase:
XB-GENE-5950305
UniProt:
A0A8J0R0V7
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All DBs
Position
1:36802735..36958494
Genome browser
AA seq
1924 aa
AA seq
DB search
MASSATLQGEEIPPPQESPPDTACREAQKWIEQVTGKSFGDKDFRTGLENGILLCELLNA
IKPGLVKKINRLPTPIAGLDNITLFLRGCKELGLKESQLFDPGDLQDTANRTTARNSDCN
RKLRNVLITVYWLGKAASSCSSYSGNNLDLKEFEGLLAQMRKENEEIESPKRSIRDSGYI
DCWDSERSDSLSPPRHGRDDSFDSLDSFGSRSQQTPSPDVVLRGSSDGRGSDSESDLPHR
RLPDVRKDDMSARRVSYGENKAFVPFNQYLPNKSNQTSYIPAPLRKKKAEREDYRKSWST
ATSPLGGERPFSPKQSPVIKEEQNELQCEGEGTKQMIALKEPCLGAENRSERVGESEGGV
MGQSSANDDIPKDAEEVRKRKHLQKAGIKVLPATKRYSSPSQFAEDIDGAPDIVLRKENT
FLKSYEGMGSDSEEEEECKVPDIQRDDLATRRARMNQPKSPMQFNQYIQGSYLNKNRASR
KLNSSKTSTPASPKMSQDIREYQGPQLLKPSHVCKEKTFPIPSDNKEDAEAEQEKVPDIQ
KDDLAKRKAKASVSLPKEPSAFAAVSITKADMETWQRLRMSSEDSEHLNDRQADQQEQTS
KIDVTRATNDDFGRRKLSLQEKRARNKQKFVRFGPVTEIDQQKWDRLCIAKAESGQESEE
MKGSITSDETASHISPSASAQRSQPQEDVGTGPVLPHESRSFTPERLVSPAPPENESEIQ
LLETQQDDMMARRTGTFQKCARTSRDSPVSHQYALHSQQHEEKSDSLELEEKQGLFLDVN
PQLRKLLLSDLANTSSKATSPTLGSKSLKVTKEAEDVKNDMKEGALNTGKDPNSVIPEDN
TIAPDPEKDDMMTRKISVSQKPSCVSLGHFLPVPFSLQRREGEKKPTSCIISSTKKSKNA
SKAVPADISDVPSKPLDQKETKEHGELGDTTCKQASNSVETPMCTELDSQQQDGLERRMI
LSTDLANTELKITPPTLANNSPTITKVQEPDATISEDNTTAPNPEKDDMMTRRISVTQKP
SCVGLGHFLPVPFSLQQKVEEKKSTSSTLSIKIKSDNCTQALAVGSSDLPCKLLGQCETE
GHVELRSDVTCDQTSTEIISDGIPTGKGLDTQAEDALETCDHELFRFSPRSVLSDDGESM
SMCDMRYEEEGSMQPHSRAHYEHLQHVNSLLKEEDDTWQDDLAKWKTRRRSASQDLIKKE
EQRKKMERMMSGEDELSERRKSIKTYREIVEEKERREKELHEAYKNAKSRDEAEHILQSY
IEKFTISEAVLEGLVMPKILERSQSVEPSLLSSSEDPNILKYLRQQSLPSPKYTSTVEAT
VSPSSPCEAKSPTGLISPSKNIISKTVPMLTAKPYSQPKNTQEVLKTFKVDGKVNLNGVE
EQKEEEHGNQTFAPSLTRSQMFEGVARVDVPVVEIKQDVTSIELNLARPNTLNSLQEPKS
LCEDRNHISQEDESDSLVQLERAHSVEILSEGNTQSSNATQDVPVVSSIEIPPLTINGKD
TVDERKVEAAELIMHWSLEPNHKEAKENSLSPLKTSENLEESLQFKENESSHKVQLNITL
QSRNAWRRSQFFLQPVDTECTENSPALVPSLNSPNRFCTWDPEEERKRQEKWQQEQERLL
QERYQREQEKLKEEWEKAQKEVEEEERKYYEEERKIIEDTVVPLTLSPNSNAQFNISERN
GNFIPALTEHVKRDQENNNEKLLTESSRTIKNETHMHSNVTQQLLLHTQEGSILGAKEKQ
IKGKTDKWEAEQSICIMDREELSNHVQSNECNTPTRLPLQAGCKQVTSSESSLPGDLGSP
KNPITEKDAIQNMSSIIPTRGTDFKEDTMNSSQSSTSQCQSPNRSVSGKKLCSTCGLPLG
KGAAMIIETLSLYFHIQCFKCGLCKGQLGDAITGTDVRIRNGLLNCNDCYMKSRSKAAGH
PTPL
NT seq
5775 nt
NT seq
+upstream
nt +downstream
nt
atggccagctccgccacactgcaaggggaagagatccccccgccccaggagtctccccca
gacacggcttgcagggaggcacagaagtggattgagcaagttactggcaaaagctttggc
gacaaagacttcaggactggactggagaatggaatccttctgtgcgagttattaaatgct
attaaaccaggactcgtaaaaaagatcaacagacttcctactcccattgctggattggac
aatataacattattccttagaggctgcaaagagctcgggctgaaagaatctcagttgttt
gacccaggtgacctacaggacacagcaaacaggacaacagccaggaattcagattgcaac
agaaaactaagaaatgtactaatcaccgtgtactggctggggaaagctgcaagcagctgc
tcgtcctatagtggcaacaacctggacttaaaggagtttgagggattgctggcacaaatg
agaaaagaaaatgaggaaatagagagtccaaaacgcagcatacgggacagtggctacata
gattgttgggactctgagagaagtgactccctttctcctcccagacatggtagagatgac
tccttcgatagtttagactcatttggatctagatcacaacagacaccatctccagatgta
gtgctgaggggaagcagcgacggcagaggaagcgactctgagtctgacctacctcacaga
aggttacctgatgtgcgaaaagatgatatgtctgctagacgggtatcctacggtgaaaac
aaagcatttgtgcctttcaaccaatacctccccaacaagagcaaccagacctcctacatc
ccggcacccctgaggaagaagaaggctgagcgtgaggactaccggaaaagctggagcaca
gctacatcccccctggggggagagcgacccttcagtcccaaacaaagtccagtcattaaa
gaagaacaaaacgagttgcagtgtgaaggagaagggaccaagcagatgattgccttaaaa
gaaccttgccttggagcagaaaataggagtgagagagttggtgaaagtgaagggggtgtc
atgggacaatcatctgctaatgatgacattccaaaagatgcagaggaagtgagaaagcgc
aagcaccttcagaaagcgggtatcaaggtcttgcccgcaacaaagcgctacagcagtcca
agtcaatttgctgaagacattgatggcgctccagacattgtgctgcgaaaagagaacacc
ttcctgaagtcatatgaagggatgggctctgattccgaagaagaagaagagtgcaaagta
cctgatatacagcgagatgacttggccacaaggcgtgcaaggatgaaccaaccaaaaagc
ccaatgcagtttaatcagtatatacaggggtcatacttaaacaaaaacagagcatcaaga
aagctgaacagttctaagacttccactccagcttctccaaaaatgtctcaagatatcagg
gagtaccaaggcccccagttattaaagccatcacacgtctgcaaagaaaagacatttcca
ataccctcagacaataaagaggatgcagaagcagagcaagaaaaagttcccgacattcag
aaagacgacctggcgaaacgcaaagctaaagcttcagtttcactgccaaaggaaccatcg
gcctttgcagcggtttcaattacaaaggccgacatggaaacttggcagaggcttcgaatg
tcttctgaagatagtgagcacttgaatgacaggcaggctgaccagcaagagcaaacatcc
aagattgatgtgactagagcgacaaatgatgactttgggaggaggaaattgtctctgcaa
gagaaaagggctcgaaacaaacagaagtttgtacgctttggcccagtgactgaaattgat
cagcagaagtgggataggctttgtatagccaaggctgaatctggccaggaaagtgaagag
atgaagggcagcattacgtctgatgaaactgccagccacatatctccctcagcttctgct
cagcgctcccaaccccaggaggatgttggcacagggccagtcttgccacatgagtcaaga
tcttttacaccagagagattggtttcacctgctcctcctgaaaatgaaagtgaaattcag
ctcctagaaacacagcaagatgacatgatggcaaggagaacaggtacattccaaaaatgc
gccagaaccagcagagactctcctgtgtcccaccaatatgcactccatagccaacaacac
gaagagaagtctgactcgctggaactcgaagagaaacaaggactctttctggatgttaac
ccacaactgagaaaattactgctgtcggacttggcaaatactagttcaaaagcaactagc
cctactttggggagcaagtctctgaaagtcaccaaagaagctgaagatgtaaaaaatgac
atgaaagaaggtgccttgaacacaggaaaggatccaaactctgttatcccagaggataac
acaattgcaccagacccagaaaaagatgacatgatgacaagaaaaatctcagtgagccag
aagccatcttgcgtcagccttggacacttccttcctgttcctttttctttgcagcgcaga
gagggggaaaagaaaccaacaagctgcatcatatcaagcaccaaaaagtccaaaaatgca
tccaaagctgttccagccgacatttctgatgttccttctaagccccttgaccagaaagaa
acaaaagaacatggtgaattaggagatacgacttgcaagcaagcctccaatagtgtggag
actcccatgtgtacagagttagacagccagcaacaggatggtcttgagaggagaatgata
ctgtctactgacttggccaatactgagttaaaaataactcctcctactttggccaacaac
tctccaaccataacaaaagtacaagagccagatgcaaccatctcagaggacaatacaact
gcaccaaaccctgaaaaagatgatatgatgaccagaagaatctctgtaacccagaaacca
tcgtgtgtaggtcttggccacttccttccagttccattttctttgcagcaaaaagttgag
gaaaagaaatcaacgagctccactctatcgatcaaaataaagtcagataattgcacccaa
gcacttgcagtcggcagttctgaccttccttgtaagctcctcggccaatgtgaaacagag
ggacatgttgaattacgatccgatgtgacttgcgatcaaacctccactgagatcattagt
gatgggattcccactggtaaagggttagatacccaggcagaagacgctcttgagacatgt
gaccatgagttattcagattcagcccaagatctgttctgtctgatgatggagagagcatg
agcatgtgcgacatgaggtacgaagaagagggaagtatgcagcctcacagcagggcacac
tatgagcatctacagcatgtcaacagcttgctcaaggaggaggatgacacatggcaagat
gacctagctaagtggaagacacggagaagaagtgcatcacaggatctgatcaaaaaagag
gaacagaggaagaagatggagagaatgatgagcggagaggatgaactgtcggagcgtagg
aaaagcataaaaacatatagagagattgtggaagaaaaagaacgtcgagagaaagaactg
catgaagcctacaaaaatgccaagtcaagagatgaggctgaacacatattacagagctac
attgaaaagtttacaattagtgaagctgttcttgagggattagtaatgccaaaaatctta
gaaagaagccagtcggtggagccaagtttattgtcttcatcagaggacccaaacatcctg
aaatacctgaggcaacagtctttaccatcaccaaaatacacttccactgttgaagcaact
gtctcccccagcagcccatgtgaagcaaaaagtccaacaggtctgatatcaccaagcaaa
aacattatctcaaagactgtgcctatgctaacagccaagccttactcccagcccaaaaac
acccaggaagtcctcaagacatttaaggtagatggaaaggtaaacctcaacggggtagaa
gagcagaaagaagaggaacatggaaaccagacatttgccccatcactcacccgatctcag
atgtttgaaggtgtagccagagttgatgttcctgttgttgaaataaagcaagacgtaact
tccatagagcttaatctggccagaccaaacaccctgaattccttacaagaacccaaaagt
ctctgcgaagacagaaatcacataagccaggaggatgagtcagattctctggtgcaatta
gaaagagctcactccgtggaaatattgtcagaaggtaacacccaatcaagcaatgcaacc
caggatgtacctgttgtgagcagtatagagattccaccattgaccatcaatggaaaggac
actgtggatgagaggaaagtggaagctgccgagttgatcatgcattggtccctggagccg
aatcataaggaagccaaagaaaattctttatcgcctttaaaaacttctgaaaatttagaa
gaatccttgcagtttaaagagaatgaatcatcacacaaagtgcagctaaacattacgctt
cagagccggaacgcctggagacgctcccagttttttttgcagccagtggatacagaatgt
acagaaaattcaccagcacttgtacccagtttgaattctcctaaccgattctgcacatgg
gaccctgaagaagaacgcaaacggcaagaaaaatggcagcaggagcaggaaaggcttctc
caggagaggtaccagagagagcaggaaaaacttaaagaagaatgggaaaaagctcagaaa
gaagtagaagaggaggaaaggaaatattatgaggaggaaagaaagataattgaagacact
gtggtcccactgactttgtctccaaattctaatgcacagtttaatatctctgaaagaaat
gggaacttcattccagcacttacagaacatgtcaagagagatcaagaaaataacaatgaa
aagctcttgacagagtccagcagaacgataaagaatgagacacatatgcacagcaatgta
acacagcaactgcttttgcatacacaggaggggtcaattcttggtgctaaagagaaacaa
ataaagggaaaaacagacaagtgggaagcagaacagtccatctgtattatggaccgagag
gagctgagcaaccatgtgcagtctaatgaatgtaatacacccactaggttacccttgcag
gcaggatgtaaacaagtgacgtcatcagagtcaagtctgcctggggatcttggatcacca
aaaaatcctatcactgaaaaagatgctattcagaatatgtcgtccataatacccacacgg
ggaactgatttcaaggaagatacaatgaattcttcacagtcctctacatcacagtgccag
tcaccaaacaggtctgttagtgggaaaaaactgtgctccacatgtggacttcctctaggc
aagggagctgccatgataattgaaaccctcagtctttatttccacatccagtgcttcaag
tgtggactgtgtaagggacaacttggggatgcgatcaccggcacagacgtcagaattcga
aatggcctactgaactgcaatgactgttacatgaagtctagaagtaaggcggctggccac
cccacccctttgtga
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