Xenopus tropicalis (tropical clawed frog): 100379853
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Entry
100379853 CDS
T01011
Symbol
hdac6
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
xtr01009
]
100379853 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
100379853 (hdac6)
04131 Membrane trafficking [BR:
xtr04131
]
100379853 (hdac6)
03036 Chromosome and associated proteins [BR:
xtr03036
]
100379853 (hdac6)
Enzymes [BR:
xtr01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
100379853 (hdac6)
Protein phosphatases and associated proteins [BR:
xtr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100379853 (hdac6)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
100379853 (hdac6)
Membrane trafficking [BR:
xtr04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
100379853 (hdac6)
Chromosome and associated proteins [BR:
xtr03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
100379853 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
100379853
NCBI-ProteinID:
XP_031746852
Xenbase:
XB-GENE-5873935
UniProt:
A0A8J1IMR8
LinkDB
All DBs
Position
8:1036804..1049877
Genome browser
AA seq
1056 aa
AA seq
DB search
MAERICAQSCMASSAGAQTSGTPRGMRGSLPLSRKAPRRKGASPQGSQSLRKLKKRGAHR
MRRTRPRRSCVTTRGTGGEPYKARQAVQGTGLVYDEQMAQTCCXWDENFPECPARIWAVR
DKMAEYGLAERCVAVQAREASEEEISLIHSPQYVALMGSTQNMNVEELQALSDRYDSVYL
HPTSFTCASLAVGSVLQLVDKVLRREIRNGLAVVRPPGHHAHVDQMNGYCMFNQLAIAAR
YAQRTYGAKRVLIVDWDVHHGQGTQFLFENDPSVLYFSVHRYENGGFWPHLRESASSAVG
KERGERFNVNVAWNKTRMSDADYIHVFLNILLPIAYEFQPHLVLVAAGFDSVVGDPKGEM
SATPGCFSHLTHLLMSLAQGRLILSLEGGYNQRSLAEGVCACLKALLGDPCPKLPLPSAP
CQSALDSISDTLSAHCRLWKVLQDYESEGEAIDEPQSAEEQPPDGADEPPLEKVLEQSMM
EVMREVPAQRTALVYDEQMMEHHNMWDSCHPESPQRINQIFKRHKDLGLLDRCSRIPSAL
GHSEGLQMCTGGLSYIQKIEASATXTPRPAPTGDEYNXIYINSRSYHSARLAAGSTFSVV
EAVVTGKAQNGVCIVRPGSHMQKPAEACGFCFFNTVAQPARYAQRLRSRXEDPLRVMILD
WXVHHGNGTQHIFQRMPGCVLYVSLHRYDEGLFFPNSEEHHMTRFAIGKGAGSMWNIPWN
GSKXGDPEILMAFHRVVMPIAYELTRSWFCIAGFDGPAGDPLGACKXSPEGNAXLTHLLM
GLAGGRVILVLEGGYNQHPISESHGYVHSLPSGDPPPTLSDLRPPKPSAFNSVRKVRQAH
RQVGRSLRLNVAPQGAHNLQHSPVMXNPQKGRFATEAGPSAMISHKGLTSQQDPLRRDRH
SLHRHSAQTSVAETPRPLVPESRFLPRGGDPHKAGAAGRGCGGSEAETPTIGFETLMESM
ANESGEDCITPLPGAPTWLCECCAPGGSGCAVGRYVSPTHAVPWTCLWHHLVSQFSDLSV
WCYGCESYVHHQVTPHKAGVLGGLREARRPGNPTSV
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaggatttgtgctcagtcctgcatggcctcctccgcaggagcccaaaccagt
ggcaccccgaggggcatgagaggaagcctcccgctctcccggaaagccccaagaagaaaa
ggtgcatccccccaaggctcccagtccctaaggaagttaaagaaaagaggggcccacagg
atgagacgcacccgcccgagaaggagctgtgtgaccactagagggactggtggagaaccc
tataaagcaaggcaagccgtgcagggaacgggactggtttatgatgagcagatggcacaa
acctgctgttaatgggatgagaacttccctgaatgccctgcccggatctgggcagtgaga
gacaagatggctgaatacggcctggcagagcgctgtgtggcagtgcaggcacgagaagca
tcagaggaggaaatctcgctcattcacagcccccagtatgtggccctgatgggatccact
cagaacatgaacgtggaggagctgcaagctctgtccgaccgctatgattctgtgtacttg
cacccgacgtccttcacctgcgcctccttagcagtgggctctgtgctgcagctggtggat
aaagttctgcgtagggagatccgcaatggattggctgttgtcaggccccctggacatcat
gcccacgttgaccagatgaacggttactgcatgtttaaccagcttgctattgctgcccgg
tatgcccaacggacatatggtgccaagcgggtcctaattgtagactgggacgtgcatcat
gggcagggcacacagttcctgtttgagaatgatcccagtgtcctgtatttctctgtccat
cgctacgagaacggggggttttggccccatctgagagaatcggccagttctgctgtgggc
aaggagcggggagagagattcaatgtgaatgtggcctggaacaagaccagaatgagcgac
gctgattatatccacgtgttccttaacatcctcctccctatcgcctacgagttccagcct
cacctcgtcttggtagcggcaggatttgattctgtggtcggagaccctaagggagagatg
tcggccaccccagggtgtttctctcacctcacccatttgctgatgtcgctggcacagggc
aggctcatactttccctagagggtgggtacaaccagcgctcgttggcagaaggagtttgt
gcgtgtctaaaagccttactgggtgacccatgcccaaagctgcccctgccctctgctccc
tgtcaaagcgcactggattccatatcagacacgctaagtgctcattgcaggttatggaag
gtgctgcaggattacgagagtgaaggagaggccattgatgagccccagagtgctgaagaa
caaccccctgacggggcagatgagccgcctctggaaaaagttctagaacagtcaatgatg
gaagtgatgagggaggtgccagcgcagcgaactgctctggtgtatgatgagcaaatgatg
gagcatcacaatatgtgggacagttgtcacccagagtctccgcagaggataaaccagata
tttaagcggcacaaggacctggggctgttggatcgttgcagtcgcatcccgtcggcgctt
ggccactcagaaggactacagatgtgcacaggtggcctttcctacatccagaagattgag
gcatctgccacatgaaccccgagacctgcaccgactggggacgagtacaatnccatttat
atcaattccagatcctatcacagtgcccggctggcagctggctccacctttagtgttgtg
gaggccgtggttacaggaaaggcacaaaatggagtttgcattgttcgccccgggtcacac
atgcagaaacccgctgaagcctgtggtttctgtttctttaacacagtggcacagccggcc
cgctatgcacagaggctgcggagccggntcgaggatccactcagagtaatgattttggat
tggngtgtgcaccatggcaacggcacacagcatatcttccagaggatgccaggttgtgtg
ctctacgtgtccctccaccggtatgatgagggcctgttcttccctaattcagaagagcat
cacatgacaaggtttgcaattgggaagggggcgggttcaatgtggaacatcccttggaat
ggcagcaagnatggcgacccggaaatattaatggcgtttcacagagtggtgatgcccatt
gcctatgagttaacccgcagctggttctgtatcgctgggtttgatgggcccgctggagac
cctctgggggcttgcaagtgaagccctgaaggtaatgcctaattgacgcacctattgatg
ggcctggcagggggcagagtgattctggtgctagagggtgggtacaatcaacatcccatc
tccgagtcccatggttatgtgcactcactcccttctggggacccccctcccactctgtct
gacctgcgacccccaaaaccgtctgctttcaactccgttcgcaaagtccgtcaggctcat
cggcaagtagggcgcagccttcggctaaacgtggccccccagggggcacacaatctccag
cactccccagtgatgnngaacccccagaaaggaagatttgctacggaggctggaccttcc
gccatgatctcccacaaggggcttacctcccaacaggatcccctcagaagagaccgccat
tccctgcatcgccacagcgcccagacttccgtggcagagacacctcgcccattggtgcca
gagagcagatttctccccagaggaggtgacccccacaaagcaggagctgctgggcgaggc
tgcggaggctcggaggctgaaacccccacaatcgggtttgagactctcatggagtcgatg
gcgaacgagtccggtgaggattgcatcaccccgctgcctggtgcccccacttggctctgt
gagtgctgtgcccccggcgggtctggatgtgctgtgggcaggtatgtctccccaacacat
gctgtgccatggacttgcctctggcatcaccttgtttctcagttctccgatctgtctgtg
tggtgctacggctgtgagtcctacgtccatcaccaggtgacgccccacaaagcaggagtg
ctgggcgggctgcgggaggctcggaggcctggaaaccccacatcggtttga
DBGET
integrated database retrieval system
