Xenopus tropicalis (tropical clawed frog): 549735
Help
Entry
549735 CDS
T01011
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
549735 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xtr03400
]
549735 (lig4)
Enzymes [BR:
xtr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
549735 (lig4)
DNA repair and recombination proteins [BR:
xtr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
549735 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
549735
NCBI-ProteinID:
NP_001016981
Xenbase:
XB-GENE-964443
UniProt:
Q28EB8
LinkDB
All DBs
Position
2:117890115..117896356
Genome browser
AA seq
911 aa
AA seq
DB search
MSATKASDSAAERTVASQVPFADLCCTLEKVQKCKNRTEKSHIFKQFVDSWRKFHEALHK
SQPKTTDSFYPAMRLVVPQLERERMAYGIKETMLAKLYIKVLGLPKEGKDAIKLLNYRSP
TSSHSDAGDFAAIAYFVLKSRCRKEGSLSIQEVNYHLDSIANNNAAKKKELIEKSLLHLI
ANTTALEQKWLIRMIIKDMKLGFSQQTVFSIFHPDAAELHNVTTDLEKVCIQLHDPNVCL
SDVSISMFSAFKPMLAAIANIQNIEKQMNHQSFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPYIHNAFSLNIQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMV
DDSELQTCYCVFDVLLLNDQKLAHETLRKRYDILQEIFIPIPGRFHIVDKTEASTKKNVV
DALNEAIDKREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVNGLMDELDLIIIGGYWGKGS
RGGMMSHFLCGVAEASGPGEKPSVFHSICRVGSGYTMKELFDLGLKLAPHWKTYRKRDPP
SNILCGIEKPEAYIQPCNSVIVQIKAAEIVTSDMYKTGCTLRFPRIEKIREDKEWYDCMT
LDDLEQFRDKASGKLASKHLHIDDEPHEKKRKTAPKLKKVIGIVSHLKAPDLSNVYQESS
VFAEVEFCVMSGTDTHSKDDLANIIAKCGGIGVQNPGADTYCVIAGTENVRVKNIICSNK
HDVVKAAWLLECFESKTFVPWQPHHMIHMCPSTAEHFACEYDCYGDSYITDTSEYQLREV
FHRMSNIREKIPFEMMADLEERYSWNNSSHSFFRHCTVYVDSFATINDPTTRINTSSLNL
RALELRFYGAKLVNQLEEGISHVVVGEDLSRLEQMKTMRRAIAKKFKIVSVSWVLDSVKM
RVPQMENSYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaacaaaagcctccgattctgcagccgaacgtactgtggcctcacaagttcct
tttgctgatctctgctgcactcttgaaaaagttcaaaaatgcaaaaacagaactgagaaa
agtcacatttttaaacaattcgttgattcatggagaaaatttcatgaagcccttcataaa
agtcagccaaaaacaacagattctttctatccagccatgcggcttgtagttccacaactt
gaaagagagagaatggcttatggaatcaaagaaactatgcttgctaaattgtacattaag
gttttaggcttgccaaaagaaggcaaagatgcaataaaacttttgaattatagatcgcca
actagttcacatagtgatgcaggggattttgcagccattgcttattttgttctcaagtca
agatgcagaaaagagggtagcttgtcaatacaagaagtaaattaccatttagattcaatt
gctaataataatgcagcaaaaaagaaggaactcatagaaaaaagtttgctgcatttgatt
gctaacacgactgctcttgaacaaaagtggctcatcagaatgattattaaggacatgaaa
ctgggttttagccagcaaacagttttctccatcttccatcccgacgcagcagagctgcat
aatgttactaccgatcttgagaaagtttgtattcagctgcatgatcctaatgtgtgtctc
agtgatgtttccatatcaatgttctctgcttttaaaccaatgctggctgccattgccaat
attcagaatattgaaaagcaaatgaaccaccagagtttttacattgaaacaaaacttgat
ggagaacgaatgcagatgcacaaagatggggacgtatataaatatttctcacggaatgga
tttgattacacacagcagttcggtgcatctcctcttgaaggttctttgacgccatatatt
cacaatgcttttagtctgaacatacaaaattgcattctagatggagaaatgatggcatac
aatccaaatactcagactttcatgcaaaaaggaaataagtttgatattaaacgcatggtg
gatgattctgagttgcaaacttgttactgtgtttttgatgttctgttgcttaatgatcaa
aaattggcacatgaaactctcagaaaaagatatgacattctgcaagagatttttatccca
attccaggcagattccatattgttgataaaacagaagcaagcacaaaaaagaatgttgtg
gatgcacttaatgaagcaattgataaaagggaagaaggcattatggttaaagatccaatg
tctatctacaaaccagacaaacgtggggaaggatggctgaagattaagcctgaatatgta
aatggcttaatggatgagctagacctaatcatcattggaggctactggggaaaaggttcc
cgtggtggaatgatgtcccatttcttatgtggtgttgccgaagcatcaggtcctggggaa
aaaccatctgtttttcactcaatttgccgtgttggctctggttataccatgaaagaatta
tttgatcttggtttaaagttggctcctcactggaaaacatatcggaaaagagacccaccc
agcaatattctttgtggaatagaaaaacctgaagcatatattcaaccttgtaattctgtt
attgtgcaaattaaagcagcagaaattgttaccagtgatatgtacaaaactggttgcact
cttagattccctcgtattgaaaaaataagggaagataaggaatggtatgactgtatgaca
cttgatgacttggaacagtttagagacaaagcatctgggaaactggcttctaaacactta
catattgatgatgaaccacatgaaaagaaacgtaaaactgcaccaaagcttaagaaagtg
attggaattgtttcacatctaaaagcacctgacctcagtaatgtatatcaggagtcctct
gtgtttgcagaagtggagttctgtgttatgagtggaacagatacgcattctaaagatgat
ctagcgaacattattgctaaatgtggaggtattggggtacagaatcctggggcagataca
tactgtgttattgcaggaacagagaatgtgagagtgaaaaacattatctgctcaaataaa
catgacgttgttaaagcagcatggctattggagtgttttgaaagtaaaacctttgtgcca
tggcagcctcaccacatgatacacatgtgtccatcgactgcagaacattttgcttgcgaa
tatgactgctatggcgatagctatatcacagatacaagcgaatatcaattgagagaggtc
tttcacagaatgtctaacataagagagaaaattccctttgaaatgatggctgatttagaa
gagaggtactcatggaataactcttctcatagtttctttcgtcattgcacggtatatgtc
gatagttttgccacaattaatgacccaactacaagaataaatacatccagcctaaatcta
agagcactggaactacgtttttatggtgcaaaattagtaaatcagcttgaagaaggaatt
tcacatgttgtagttggtgaagacttgtcccgtctggagcaaatgaaaactatgaggagg
gccattgcaaaaaaatttaaaattgtgtctgtttcgtgggtacttgattcagtaaaaatg
agagtgcctcaaatggaaaattcatatttgctataa
DBGET
integrated database retrieval system
