KEGG   Xenopus tropicalis (western clawed frog): 549735Help
Entry
549735            CDS       T01011                                 

Gene name
lig4
Definition
(RefSeq) ligase IV, DNA, ATP-dependent
  KO
K10777  
DNA ligase 4 [EC:6.5.1.1]
Organism
xtr  Xenopus tropicalis (western clawed frog)
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xtr00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    549735 (lig4)
Enzymes [BR:xtr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     549735 (lig4)
DNA repair and recombination proteins [BR:xtr03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     549735 (lig4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
Xenbase: 
LinkDB All DBs
Position
2
AA seq 911 aa AA seqDB search
MSATKASDSAAERTVASQVPFADLCCTLEKVQKCKNRTEKSHIFKQFVDSWRKFHEALHK
SQPKTTDSFYPAMRLVVPQLERERMAYGIKETMLAKLYIKVLGLPKEGKDAIKLLNYRSP
TSSHSDAGDFAAIAYFVLKSRCRKEGSLSIQEVNYHLDSIANNNAAKKKELIEKSLLHLI
ANTTALEQKWLIRMIIKDMKLGFSQQTVFSIFHPDAAELHNVTTDLEKVCIQLHDPNVCL
SDVSISMFSAFKPMLAAIANIQNIEKQMNHQSFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPYIHNAFSLNIQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMV
DDSELQTCYCVFDVLLLNDQKLAHETLRKRYDILQEIFIPIPGRFHIVDKTEASTKKNVV
DALNEAIDKREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVNGLMDELDLIIIGGYWGKGS
RGGMMSHFLCGVAEASGPGEKPSVFHSICRVGSGYTMKELFDLGLKLAPHWKTYRKRDPP
SNILCGIEKPEAYIQPCNSVIVQIKAAEIVTSDMYKTGCTLRFPRIEKIREDKEWYDCMT
LDDLEQFRDKASGKLASKHLHIDDEPHEKKRKTAPKLKKVIGIVSHLKAPDLSNVYQESS
VFAEVEFCVMSGTDTHSKDDLANIIAKCGGIGVQNPGADTYCVIAGTENVRVKNIICSNK
HDVVKAAWLLECFESKTFVPWQPHHMIHMCPSTAEHFACEYDCYGDSYITDTSEYQLREV
FHRMSNIREKIPFEMMADLEERYSWNNSSHSFFRHCTVYVDSFATINDPTTRINTSSLNL
RALELRFYGAKLVNQLEEGISHVVVGEDLSRLEQMKTMRRAIAKKFKIVSVSWVLDSVKM
RVPQMENSYLL
NT seq 2736 nt NT seq  +upstreamnt  +downstreamnt
atgtctgcaacaaaagcctccgattctgcagccgaacgtactgtggcctcacaagttcct
tttgctgatctctgctgcactcttgaaaaagttcaaaaatgcaaaaacagaactgagaaa
agtcacatttttaaacaattcgttgattcatggagaaaatttcatgaagcccttcataaa
agtcagccaaaaacaacagattctttctatccagccatgcggcttgtagttccacaactt
gaaagagagagaatggcttatggaatcaaagaaactatgcttgctaaattgtacattaag
gttttaggcttgccaaaagaaggcaaagatgcaataaaacttttgaattatagatcgcca
actagttcacatagtgatgcaggggattttgcagccattgcttattttgttctcaagtca
agatgcagaaaagagggtagcttgtcaatacaagaagtaaattaccatttagattcaatt
gctaataataatgcagcaaaaaagaaggaactcatagaaaaaagtttgctgcatttgatt
gctaacacgactgctcttgaacaaaagtggctcatcagaatgattattaaggacatgaaa
ctgggttttagccagcaaacagttttctccatcttccatcccgacgcagcagagctgcat
aatgttactaccgatcttgagaaagtttgtattcagctgcatgatcctaatgtgtgtctc
agtgatgtttccatatcaatgttctctgcttttaaaccaatgctggctgccattgccaat
attcagaatattgaaaagcaaatgaaccaccagagtttttacattgaaacaaaacttgat
ggagaacgaatgcagatgcacaaagatggggacgtatataaatatttctcacggaatgga
tttgattacacacagcagttcggtgcatctcctcttgaaggttctttgacgccatatatt
cacaatgcttttagtctgaacatacaaaattgcattctagatggagaaatgatggcatac
aatccaaatactcagactttcatgcaaaaaggaaataagtttgatattaaacgcatggtg
gatgattctgagttgcaaacttgttactgtgtttttgatgttctgttgcttaatgatcaa
aaattggcacatgaaactctcagaaaaagatatgacattctgcaagagatttttatccca
attccaggcagattccatattgttgataaaacagaagcaagcacaaaaaagaatgttgtg
gatgcacttaatgaagcaattgataaaagggaagaaggcattatggttaaagatccaatg
tctatctacaaaccagacaaacgtggggaaggatggctgaagattaagcctgaatatgta
aatggcttaatggatgagctagacctaatcatcattggaggctactggggaaaaggttcc
cgtggtggaatgatgtcccatttcttatgtggtgttgccgaagcatcaggtcctggggaa
aaaccatctgtttttcactcaatttgccgtgttggctctggttataccatgaaagaatta
tttgatcttggtttaaagttggctcctcactggaaaacatatcggaaaagagacccaccc
agcaatattctttgtggaatagaaaaacctgaagcatatattcaaccttgtaattctgtt
attgtgcaaattaaagcagcagaaattgttaccagtgatatgtacaaaactggttgcact
cttagattccctcgtattgaaaaaataagggaagataaggaatggtatgactgtatgaca
cttgatgacttggaacagtttagagacaaagcatctgggaaactggcttctaaacactta
catattgatgatgaaccacatgaaaagaaacgtaaaactgcaccaaagcttaagaaagtg
attggaattgtttcacatctaaaagcacctgacctcagtaatgtatatcaggagtcctct
gtgtttgcagaagtggagttctgtgttatgagtggaacagatacgcattctaaagatgat
ctagcgaacattattgctaaatgtggaggtattggggtacagaatcctggggcagataca
tactgtgttattgcaggaacagagaatgtgagagtgaaaaacattatctgctcaaataaa
catgacgttgttaaagcagcatggctattggagtgttttgaaagtaaaacctttgtgcca
tggcagcctcaccacatgatacacatgtgtccatcgactgcagaacattttgcttgcgaa
tatgactgctatggcgatagctatatcacagatacaagcgaatatcaattgagagaggtc
tttcacagaatgtctaacataagagagaaaattccctttgaaatgatggctgatttagaa
gagaggtactcatggaataactcttctcatagtttctttcgtcattgcacggtatatgtc
gatagttttgccacaattaatgacccaactacaagaataaatacatccagcctaaatcta
agagcactggaactacgtttttatggtgcaaaattagtaaatcagcttgaagaaggaatt
tcacatgttgtagttggtgaagacttgtcccgtctggagcaaatgaaaactatgaggagg
gccattgcaaaaaaatttaaaattgtgtctgtttcgtgggtacttgattcagtaaaaatg
agagtgcctcaaatggaaaattcatatttgctataa

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