Xenopus tropicalis (tropical clawed frog): 780105
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Entry
780105 CDS
T01011
Symbol
tfeb
Name
(RefSeq) transcription factor EB
KO
K15590
transcription factor EB
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr04020
Calcium signaling pathway
xtr04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
780105 (tfeb)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
780105 (tfeb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xtr03000
]
780105 (tfeb)
Transcription factors [BR:
xtr03000
]
Eukaryotic type
Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
Ubiquitous bHLH-ZIP factors
780105 (tfeb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MITF_TFEB_C_3_N
DUF3371
HLH
Motif
Other DBs
NCBI-GeneID:
780105
NCBI-ProteinID:
NP_001072648
Xenbase:
XB-GENE-982675
UniProt:
Q08D59
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All DBs
Position
2:71011405..71043274
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AA seq
433 aa
AA seq
DB search
MASRIGLRMQLMREQAQQEEQRERVQQQHQQHFLQQHHIVPVTASPAISTPASFQAPPPV
PVEVLEVQTHLENPTIYHLQQSRDKKVRDYLSDTYGNKFAAHLNPLRLSPKPPPAPASPA
HRAARLSSSAGNSAPNSPMARMNLCSNVEMDDVIDNIMSLDDMFGYPEPAISMPNTLPFS
SSHLGLYSDNPRLSDTVVGVTSNSCPADLAIKRELTDAENRALVRERQKKDTHNMIERRR
RFNINDRIKELGTLIPKTNELSDTRWNKGTILRASVDYIKHMQKEQQKSRELETHSRQLE
LANKQLLLRIQELERQAQMHGLPASSPHGLSPADHMKQESNSIPSIQQQLVATSQASFQM
DYPAPLGYQSNTSVDTSFPSLSRTELDLMLMEDTMLTSDPLMACDPVMSTLSPDTSKASS
RRSSFSIDEVDGL
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggcctctcgaattggtctccgcatgcaattaatgagggagcaggcacagcaggaggag
cagcgtgagcgagtccagcagcaacaccagcaacattttctacagcagcatcacattgtg
cctgttactgcttcccctgcaattagcacgccagcttcttttcaagcacctccacctgtc
cccgtggaagtccttgaggtccaaacacacctagagaatccaactatatatcatttgcaa
cagtctagggataaaaaagtccgtgattatctgtctgatacctatggaaacaagtttgct
gcccacctcaacccacttaggctttccccaaagccaccacctgcacccgcatctcctgct
catcgagcagcaagactttcttcttctgcaggcaacagtgcacccaacagtcctatggcc
agaatgaatttgtgctccaatgtagagatggatgatgtaatcgataacatcatgagcctt
gatgacatgtttggatacccagaacctgcaatctccatgccaaacacgctgccattttcc
agtagccatttaggactttacagtgacaatcctcgtctcagtgatactgttgttggtgtc
accagcaactcatgccctgcagatcttgctattaaaagagaactgacagatgcagaaaat
cgtgctttggtacgggaacgtcagaaaaaagatacccacaacatgattgaacggaggcgc
aggtttaatatcaatgatcggattaaggagctggggactttgattccaaaaacaaatgaa
ctcagtgacacacgatggaataaggggacaatactaagggcctcggtggattacatcaaa
cacatgcagaaagaacagcagaaatctcgagagctggagacacactccaggcagctggaa
ctagcaaataagcagcttttgcttcgaatccaggagctggagaggcaggctcaaatgcat
ggccttcctgcatcctcacctcatggtctgagcccagctgaccacatgaagcaggagtct
aactctattccatcgatacagcaacaacttgtagccacctcgcaagcatcctttcaaatg
gactaccctgctccactcggctaccaaagcaatacttctgtagacacatcctttccttca
ctctccaggacagagctggacctcatgctaatggaggataccatgctcacatctgaccct
ctaatggcttgtgacccagttatgtccacactttctcccgatacctctaaggccagcagt
cggcgaagcagttttagtatagatgaggtggatgggctgtga
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