Xanthomonas vasicola pv. vasculorum: C7V42_01320
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Entry
C7V42_01320 CDS
T05388
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
xva
Xanthomonas vasicola pv. vasculorum
Brite
KEGG Orthology (KO) [BR:
xva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xva03019
]
C7V42_01320 (hrpB)
Enzymes [BR:
xva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C7V42_01320 (hrpB)
Messenger RNA biogenesis [BR:
xva03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C7V42_01320 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AVQ08937
LinkDB
All DBs
Position
complement(309352..311853)
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AA seq
833 aa
AA seq
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MTDPVFPISPLLPQIRDSLAAHPRLVLEAPPGAGKTTQVPLALLDAPWLAGRKIVMLEPR
RVAARSAAMFMARQLEEPVGETVGYRIRFENKTSARTRIEVVTEGILTRLIQDDPMLESV
GVLLFDEFHERHLAGDLGLALALDVQAQVREDLRIVAMSATLDGERLAGFLEAPRLSSAG
RSFPVEIAHFPARRDEALEPQTRRAVEHALATHPGDVLVFLPGQREIARVHSALQDVLDP
AVQVLPLHGELSVEAQSQVLQPDPQGRRRVVLATNVAESSVTLPGVRVVIDSGLAREPHY
DPNSGFSRLDVTTIAQASADQRAGRAGRVASGWAYRLWPQSQRLEPQRRAEITQVELAGL
ALELAAWGSTALRFVDAPPSGALAAAHELLQRLGALTAGGGITALGRRMLALGTHPRLAA
MLAQAGEAPRVALACDLAALLEARDPLRQGGDGLAARWRALAAFRQGRSAADANRGGLAA
IDSAAKQWRRRLRCDSAPPSSVEAHALGDLLSHAFPDRIAARHPADPLRYLLANGRSARL
FDHSDLRGEPWLVASELRYEAKDALLLRAAPVDEAYLRRSLPERFVQQDVVQWDADKRAL
VARRQSSFDHIVLDSRPAGRVDPAHAAAALTDAVRQLGLDALPWTENLQQWRARVQALRT
WMPELALPDLSDTALLATLDTWLRPAFAGKTRLDALNEASLGEALKAALPWERRQAIDRH
APTRISVPSGMERQINYALDHAGQPLPPVLAVKLQELFGLAETPRIADRRIPLTLHLLSP
GGRPLQVTQDLESFWANTYPDVKKEMKGRYPRHPWPDDPWTAAATHRAKPRGT
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccccgtttttccgatctccccgttgttgccgcagattcgcgacagtctcgcc
gcgcatccgcgactggtgttggaagcgccgcctggcgccggcaagaccacccaggtgccg
ttggcgctgctggatgcaccgtggctggccggccgcaagatcgtgatgctggaaccgcgc
cgcgtggctgcccgcagcgcggcgatgttcatggcgcgccagctcgaagagccggtcggt
gagacggtgggttaccgcatccgcttcgagaacaagacctccgcgcgcacccgcattgaa
gtcgttaccgaaggcatcctgacccgactgatccaggacgacccgatgctggaaagcgtc
ggcgtgctgctgttcgacgaattccacgaacgccatctggccggcgacctggggttggcg
ctggcgctggatgtgcaggcacaggtacgcgaggacctacgcatcgtggcgatgtcggcc
acgctggatggcgagcgcctggccggctttctggaggcgccacggctgagcagtgccggg
cgcagtttcccggtggagatcgcgcactttcccgcacgccgcgacgaagcgctggagccg
cagacgcggcgtgcagtggagcacgcgctggcgacgcatcccggcgacgtgctggtgttt
ctgcccggccaacgcgaaatcgcgcgtgtgcacagcgcgctgcaggatgtgctggacccg
gcggtgcaggtactgccgctgcatggcgagctgtcggtggaggcgcaaagccaggtgttg
cagcccgacccgcaaggccgccgccgcgtggtgctggccaccaacgtggccgaatcgtcg
gtcaccttgcccggcgtgcgcgtggtgatcgacagcgggctcgcacgcgagccgcattac
gaccccaacagcggcttttcgcggctggatgtgaccacaattgcgcaggcctcggccgac
caacgcgccggtcgcgccgggcgtgtcgccagcggctgggcctaccggctgtggccgcaa
tcgcaacggctggaaccgcagcgccgcgccgaaattacccaggtggaactggccggcctg
gcactggaattggccgcctggggcagcaccgcgctgcgctttgtcgatgcaccaccgagc
ggtgcgctggccgccgcgcacgagttgctacagcggctgggcgcgctcactgcaggcggc
ggcatcactgcgctcggccggcgcatgctcgcgctgggcacgcatccacgcctggccgcg
atgttggcgcaggctggcgaagcgccgcgtgtggcgctggcctgcgacctggccgcactg
ctggaagcacgcgacccgttgcgtcagggcggcgacgggctggccgcgcgttggcgtgcg
ctggcggccttccgtcagggccgcagcgcagccgacgccaatcgcggcggcctggccgcg
atcgacagcgccgccaagcaatggcgacgccggttgcgctgcgacagcgccccgccgtcc
agcgtggaagcgcacgcactcggcgacctgctgtcgcatgccttccccgaccgtattgcc
gcacgccacccggccgacccgctgcgctacctgctcgccaatggacgcagcgcgcgcctg
ttcgaccacagcgatctgcgtggcgaaccgtggctggtcgccagcgagttgcgctacgaa
gccaaggacgccctgctgctgcgcgccgccccggtggatgaagcctacctgcgccgcagc
ctgcccgagcgcttcgtgcagcaggacgtggtgcaatgggacgcagacaagcgggccttg
gtcgctcgtcgccaatccagtttcgaccacatcgtgctcgacagccgcccggccggccgc
gtcgacccggcgcacgccgccgccgcgctgaccgacgccgtgcgtcagctcggcctggac
gccctgccgtggaccgaaaatctgcagcagtggcgcgcacgcgtgcaggcgctgcgcacg
tggatgcccgaactcgccttgcccgatctctccgacaccgcgctgctggcgacgctggat
acctggctgcgcccggccttcgccggcaagacccgcctggacgcactgaacgaagccagc
ctgggcgaagcactcaaggccgccctgccatgggagcgccgccaggccatcgaccgccac
gcacccacccgcatcagcgtgccgtcgggcatggagcggcagatcaactacgccctcgac
catgccggccaaccgctaccgccggtgctggcagtcaaactgcaggaactgttcggcctg
gccgaaaccccgcgcatcgccgaccgccgcatcccattgaccctgcacctgctctccccc
ggcggacgcccattgcaggtgacacaggatttggagagtttctgggcgaacacgtatccg
gacgttaaaaaagagatgaaggggcggtatccgcggcatccgtggcctgacgatccttgg
acagctgcagcaacccatcgggccaaacctcgcgggacctga
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