Xanthomonas vesicatoria: BJD12_04965
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Entry
BJD12_04965 CDS
T04741
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xve
Xanthomonas vesicatoria
Pathway
xve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJD12_04965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xve03019
]
BJD12_04965
03009 Ribosome biogenesis [BR:
xve03009
]
BJD12_04965
Enzymes [BR:
xve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJD12_04965
Messenger RNA biogenesis [BR:
xve03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJD12_04965
Ribosome biogenesis [BR:
xve03009
]
Prokaryotic type
rRNA helicases
BJD12_04965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
adh_short
P-loop_SecA
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
APP74716
LinkDB
All DBs
Position
complement(1134212..1136122)
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AA seq
636 aa
AA seq
DB search
MTQESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQLKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIDMYRDLLQRYEAENNVP
AIDIAAAMAKLLQGDAPFLLTPPVRGAREEFTPQRNERADRGDRGERPRFEPKFERGPRA
DGERAPRPPRGDDAGGERPRRDPPAPRGEPEFGMESYRIEVGHTHGVKPANIVGAIANEA
GLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAASPSKP
RFPRGGKPSGRPNGPGRPMDRAGAPHRKGPPKPRGE
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagacctcggcctctcggacgctgtg
atgaaagccgttgccaacgttggctacgagtcgccgtcgccgatccaggctgccaccatt
cccgcgctgcttgccgggcgcgatgtcctcggccaggcgcagaccggcaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaacgccgatctgaatcagctcaagccgcaggca
ctggtgctggccccgacccgcgagctggccatccaggtcgccgaggccttccagaaatat
gccgaagccatccctggcttccgtgtgctgccggtttacggcggccagccctacgcccag
cagctaagcgcgctcaagcgcggcgtgcacgtggtggtcggcaccccgggccgggtgatc
gatcacctggaccgcggcaccctggatctgtcccagctcaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgatgtcgaagccgtgctcaagaagctg
ccggaaaagcgccaggtggcgttgttctcggcgaccatgccgccggcgatccgtcgcatc
gcgcagacctatctgaaggacccggccgaggtcaccatcgcggccaagaccaccacctcg
gccaacatccgccagcgctactggtgggtgagcgggctgcacaaactggacgcgctgacc
cgcatcctcgaggtcgagccgttcgacggcatgatcatcttcgcgcgcaccaaggccggg
accgaagagctggcgcagaagctgcaggcccgtggcctggccgcggcggccatcaacggc
gacatgcagcaggcggcgcgtgagaagaccatcgcccagctcaaggacggcaagctggac
atcctggtcgccaccgacgtggccgcccgcggcctggacgtggagcgcgtcagccacgtg
ctcaattacgacattccgtacgacaccgaaagctatgtgcaccgcatcggccgtaccggc
cgtgccggccgcaatggcgacgccatcctgttcgtcaccccgcgcgagaagggcatgctg
cgctcgatcgagcgcgcgacccgtcagccgattgaagaaatgcagctgccgagcgtggat
gcggtcaacgacacccgcgtggcgcgcttcatgacccgtatcaccgaaaccctggccggc
ggccagatcgatatgtatcgcgatctgctgcaacgctacgaggcagaaaacaacgtgccg
gcgatcgatatcgccgcagcaatggccaagttgctgcagggcgatgccccgttcctgctg
accccgccggtacgtggcgcgcgtgaggagttcaccccgcagcgcaacgagcgtgccgac
cgcggcgaccgtggcgagcgcccgcgtttcgagcccaagttcgaacgcggcccgcgcgct
gacggcgagcgcgcaccgcgtccgccgcgtggcgacgatgccggcggcgagcgtccgcgt
cgcgatccgcctgcgccgcgcggcgagccggagttcggcatggagagctaccgcatcgaa
gtgggccacacccacggcgtgaagccggccaacatcgtcggtgccatcgccaacgaggca
ggcctggaaagccgctacatcggccggatcgacatccaggacgattactcgattctggat
ctgccggcagacatgccgcgcgagctgctgacgcacctgaagaaggtctgggtgtccggc
cagcagctcaacatgcgcaagctggaagagggcgaggccgcagcgtcgccgtccaagccg
cgctttccacgcggtggcaagccgtccggtcgcccgaacggcccggggcgcccgatggat
cgcgccggcgcgccgcatcgcaagggtccgcccaagccgcgcggcgagtaa
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