Xylophilus sp. GOD-11R: R9X41_22815
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Entry
R9X41_22815 CDS
T09600
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
xyg
Xylophilus sp. GOD-11R
Pathway
xyg00550
Peptidoglycan biosynthesis
xyg01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
xyg00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
R9X41_22815 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xyg01002
]
R9X41_22815 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
xyg01011
]
R9X41_22815 (dacB)
Enzymes [BR:
xyg01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
R9X41_22815 (dacB)
Peptidases and inhibitors [BR:
xyg01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
R9X41_22815 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
xyg01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
R9X41_22815 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Beta-lactamase
Motif
Other DBs
NCBI-ProteinID:
WPB59536
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All DBs
Position
4937496..4938866
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AA seq
456 aa
AA seq
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MVSALPAIAQTPLPAEVEAALQRARLPADSLAVMVAPAEGGAPLIRWRADQPVNAASVMK
LVTTYAALDLLGPTFRWNTPVTFGGPVDTDGTLQGDLYIRGQGDPSLVLERLWLLLRRVQ
AMGVKNIAGDIVLDRSAFVLPPHDPGAFDGEPTKPYNAAPDALLVNFRALTLGFVPDLLT
GRARVLVDPPLAGLRVPETVALAPARTACGDWRGGLQAELSDPERISFAGNFPAECGEKS
WPVAYADPDHYGARAIQGLWRAMGGRLAGRAREGRAPVGSTPAFSAASPTLAEITRDINK
YSNNIMAQQVFLTLSLQSTGTGSFEASREVVRRWWRERFADVDPPVLDNGAGLSRDGRIS
ALGLTRLLQSAWRSPLMPDLAASLPMAGVDGTLRRSQAGAGSAHLKTGSLRDVAAVAGYV
HTASGRRYVLVAIANHPEAGAARAAFDALVAWSARQ
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggtcagcgccctgcccgccatcgcgcagacgcccttgcccgccgaagtggaagccgcc
ttgcagcgcgcccgcctgccggccgattcactggcggtgatggtggcgccggccgagggt
ggcgcaccgttgatccgctggcgggccgaccagcccgtcaatgcggcctcggtgatgaag
ctggtcaccacgtatgccgcgctcgacctgctcgggccgaccttccgctggaacacgccg
gtcaccttcggcgggccggtggacaccgacggcacgctgcagggcgacctgtacatccgt
gggcaaggcgacccgtccttggtgctggaacgcctctggctgctgctgcgccgggtgcag
gcgatgggcgtgaagaacatcgccggcgacatcgtgctggaccgcagcgccttcgtactg
ccgccgcacgacccgggcgccttcgacggtgagcccaccaagccctacaacgccgcgccc
gacgcgctgctggtgaatttccgcgcactgacgctgggcttcgtgcccgacctgctcacc
ggccgcgcgcgggtgctggtcgacccaccgctggccgggttgcgtgtgcccgaaaccgtg
gcgctggcacccgcccgcaccgcctgcggcgactggcgcggtggcctgcaggccgagctg
tcggaccccgagcgcatcagcttcgcgggcaactttccggccgaatgcggcgagaagagc
tggccggtcgcctatgccgatcccgaccactacggcgcgcgcgccatccagggcctgtgg
cgcgcgatgggcgggcgcctggcggggcgtgcgcgcgaaggccgcgcgccggtcggctcc
acgccggccttcagtgccgcgtcgccgacgctcgcggagatcacccgcgacatcaacaag
tacagcaacaacatcatggcgcagcaggtgttcctcacgctgtcgctgcagtccaccggc
accggcagcttcgaggcctcgcgcgaggtggtgcggcgctggtggcgggagcgtttcgcc
gacgtcgatccaccggtgctggacaacggcgccggcctcagccgcgacggccgcatcagc
gccctgggtctgacgcgattgctgcagtcggcctggcgctcgccgctcatgcccgacctg
gccgcatcgctgccgatggcgggggtggacggcaccttgcggcgcagccaggcaggagcg
ggcagcgcgcacctgaagaccggcagcctgcgcgacgtggcggcggtcgccggctatgtg
cacaccgcgagcggtcggcgctacgtgctggtggccatcgccaaccatcccgaagccggc
gccgcccgcgcggcgttcgacgccctggtcgcgtggtcggcacggcagtaa
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