Xylophilus rhododendri: GT347_13505
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Entry
GT347_13505 CDS
T06383
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
xyk
Xylophilus rhododendri
Pathway
xyk00550
Peptidoglycan biosynthesis
xyk01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
xyk00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
GT347_13505 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xyk01002
]
GT347_13505 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
xyk01011
]
GT347_13505 (dacB)
Enzymes [BR:
xyk01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
GT347_13505 (dacB)
Peptidases and inhibitors [BR:
xyk01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
GT347_13505 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
xyk01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
GT347_13505 (dacB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
QHI98913
UniProt:
A0A857J6P3
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All DBs
Position
2940500..2941939
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AA seq
479 aa
AA seq
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MPSFSSSRRAAAALLLSLALPGLPLTAAAQSAERLPPEVEAALQRARLPADALSVIVAPA
DGGAARLRWRAERPVNPASVMKLVTTYAALDILGPAFRWNTPVTLGGPVDTDGTLQGDVF
IKGQGDPSMVMERLWLLLRRLQAQGVKNIAGDIVLDRSAFVLPPHDAAAFDGEPSKPYNA
APDALLINFRALTLGFVPEPAIGRARVMVDPPLAGLKLPDTVPLAPARTACGDWRGALQA
DLSSPDRIAFAGSYAAECGEKSWPVAYADPDHYAERAISGMWRAMGGRLAGRVREGRAPA
GFAPAFSAASPTLAEVIRDINKYSNNVMAQQVFLTLSLQAGGSGSFEASRALVQGWWRAR
FPDVEPPVLDNGAGLSREGRISAQALARLLQAAWRSPLMPDLAASLPMAGIDGTLRRSQA
AAGSAHLKTGSLNDVAAVAGYVHTASGRRWVLVAVANDPNAAAARPAFDALVNWAARQP
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcttttcctcctcgcgccgcgccgccgccgccctgctcttgtccctggcgctg
ccgggcctgcccctgacggccgccgcgcagagcgccgagcgcctgccgcccgaggtggaa
gccgcgctgcagcgggcgcgcctgccggccgatgcgctgtcagtgatcgtggcgccggcc
gatggcggcgccgcgcgcctgcgctggcgtgccgagcggccggtcaatcccgcttcggtg
atgaagctggtcaccacctatgcggcgctcgacatcctcgggccggccttccgctggaac
acgccggtgacgctcggcggcccggtcgataccgacggcacgctgcagggcgatgtgttc
atcaagggccagggcgatccgtccatggtgatggagcgcctgtggctgctgctgcggcgc
ctgcaggcccagggcgtgaagaacatcgctggcgacatcgtgctcgaccgcagcgccttc
gtgctgccgccgcacgacgcggccgccttcgacggcgagcccagcaagccctacaacgcc
gcgccggacgcgctgctgatcaacttccgcgccctcaccctgggcttcgtgcccgagccc
gccatcgggcgtgcgcgggtcatggtcgatccgccgctggccggcctgaagctgcccgac
accgtgcccctggcgccggcccgcaccgcctgcggcgactggcgcggcgcgctgcaggcc
gacctgtccagtccggaccgtatcgccttcgccggcagctacgcggccgaatgcggcgag
aagagctggccggtggcctatgccgatccggaccactacgcggagcgcgccatctccggc
atgtggcgagccatgggcggtcgcctggccgggcgcgtgcgcgagggccgggcgccggcc
ggcttcgcgcccgccttcagcgccgcctcgcccaccctggccgaggtgatccgcgacatc
aacaagtacagcaacaacgtgatggcccagcaggtctttctcacgctgtcgctgcaggcc
ggcggcagcggcagcttcgaggcctcccgtgcgctggtgcagggctggtggcgcgcgcgt
tttccggatgtggagccgccggtgctggacaacggcgccggtctcagccgcgaaggccgc
atcagcgcccaggccctggcgcgcctgctgcaggccgcctggcgctcgccgctgatgccc
gacctggccgcatcgctgcccatggcgggcatcgacggcaccctgcgccgcagccaggcg
gcggccggcagcgcccacctgaaaaccggcagcctgaacgacgtggccgccgtggctggc
tatgtgcacaccgccagcgggcggcgctgggtgctggtggcggtggccaacgatccgaat
gcggcagcagcccggccggctttcgatgcgctggtgaactgggccgcgcggcagccctga
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