Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0 8): YE0440
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Entry
YE0440 CDS
T00469
Symbol
deaD
Name
(GenBank) cold-shock dead-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
yen
Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0:8)
Pathway
yen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YE0440 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yen03019
]
YE0440 (deaD)
03009 Ribosome biogenesis [BR:
yen03009
]
YE0440 (deaD)
Enzymes [BR:
yen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YE0440 (deaD)
Messenger RNA biogenesis [BR:
yen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YE0440 (deaD)
Ribosome biogenesis [BR:
yen03009
]
Prokaryotic type
rRNA helicases
YE0440 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
DRTGG
UTP25
Motif
Other DBs
NCBI-ProteinID:
CAL10566
UniProt:
A1JIX5
LinkDB
All DBs
Position
511217..513190
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AA seq
657 aa
AA seq
DB search
MTTELETSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAA
FGLPLLHNIDPSLKAPQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSMTTRPDISQSYWVVDGVRKNDALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQAAREQTLERLKNGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVDRRERRLLQN
IERTMKMTIPPVQLPNAELLGERRLAKFAAKVGQQLESSDLDMYRALLAKLQPEEEFDIE
TLAAALLKMAQGERPLILPPEAPRRPQREFNTRDDRGSDRGRDRNDSRREPRSDSRDGGE
RPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL
PKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGERRGGGAGRSFGGER
RDGAAGAPPRRSFGSDRAPAGAGEQRRGNRDGQRPAAPRRDDAAAPAAPARRRFGDA
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgatctggggctgtccgctccaattctttct
gctctgactgatcttggttatgaaaaaccatctcctatccagttggagtgtattccacac
ctgttgaacggccgtgatgttctcggcatggcgcaaaccggtagtggcaaaacagccgca
tttggtctgccgctgttacacaacattgatccaagcctgaaagcaccgcaagtgttagta
ctggctccaactcgtgagttggctattcaagttgctgaagcattatctagcttctctaaa
catatgaacggcgttaacgtggttgccctgtatggtggccagcgttatgacgttcaatta
cgcgctttgcgtcaggggccacaagttgttgttggtaccccaggtcgtctgttagaccat
ctgaaacgcggtacccttaacctgtccaacctgagtggtttagtgttggatgaagcagat
gaaatgctgcgcatgggctttatcgaagacgtggaaaatattctggcgcagatcccggct
gaacatcagaccgcgctgttctctgccactatgccagaagcgattcgtcgtattacccgt
cgctttatgaaagagccacaggaagttcgcattcagtctagcatgactacccgtcctgat
atcagccagagctattgggttgtagacggtgttcgtaaaaacgatgcattggttcgtttc
ttggaagctgaagattttgacgctgctatcattttcgttcgtaccaaaaacgcgacgctg
gaagtggctgaagctttggaacgtagcggttataacagcgctgcattaaatggtgacatg
aaccaggctgcacgtgagcagactcttgaacgcctgaaaaatggtcgtttagatattctg
attgcaactgatgttgcggctcgtggtttggacgttgagcgcatcagcttggtagtaaac
tatgatatccctatggattcagagtcttatgtccatcgtatcggccgtaccggtcgtgct
ggtcgtgctggtcgtgcattactgttcgttgatagacgtgaacgtcgtctgttgcagaac
attgaacgtactatgaagatgactattccaccagtgcaattgccaaacgcagaattactg
ggcgaacgtcgcttagccaaatttgcggctaaagttggccaacagctggaaagcagtgat
ttggatatgtaccgtgcgttgctggctaagctgcaaccagaagaagagtttgatattgaa
actctggctgctgcactactgaaaatggcacagggcgaacgtcctctgattctgcctcca
gaagcaccacgtcgtccacagcgtgaattcaatactcgcgatgaccgtggtagcgatcgc
ggtcgtgaccgtaatgatagccgtcgcgaacctcgttctgacagccgtgacggtggcgaa
cgtccagcacgtcgcgaacgtcgtgatgttggtgagatggaactgtaccgcattgaagtt
ggccgtgatgatggtgttgaagttcgtcatatcgttggcgctatcgctaacgaaggtgat
atcagcagccgttacatcggtaacatcaagctgtttgcttcacattcaactattgaactg
ccgaaaggcatgccgggcgaaatgttatctcacttcactcgcacccgtatcctgaacaag
ccgctgaacatgcagttgttgggtgatgcacagccgcatgagcgccgtgagcgccctgca
ggtggtaacggtggtgagcgtcgtggcggtggtgctggccgttcattcggtggcgaacgt
cgtgacggtgccgctggtgctcctcctcgccgttcattcggtagtgaccgtgctccagcc
ggtgctggcgaacagcgtcgtggcaatcgtgatggtcagcgtccagctgcaccacgtcgt
gatgatgccgcagcgcctgctgcacctgctcgtcgtcgtttcggtgatgcataa
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