Yersinia enterocolitica 2516-87: CH48_967
Help
Entry
CH48_967 CDS
T03644
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein rapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
yet
Yersinia enterocolitica 2516-87
Brite
KEGG Orthology (KO) [BR:
yet00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yet03021
]
CH48_967 (rapA)
Transcription machinery [BR:
yet03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
CH48_967 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AJJ29178
LinkDB
All DBs
Position
1080198..1083104
Genome browser
AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAIDVRMVTLLFPATGENRLYARNDSPITRVMFNPGDT
ITHHEGWQLKVEEVSEENGLITYIGTRLDTEETGVSMREVLLDSKLTFSKPQDRLFAGQI
DRMDRFALRFRARKYQSEQFRLPWSGLRGIRASLIPHQLHIAYEVGQRHAPRVLLADEVG
LGKTIEAGMIIHQQLLSGRAERILIVVPESLQHQWLVEMLRRFNLRFSLFDDSRYSEALL
DSTNPFETEQMVICSLDFVRRNKQRLEQLADASWDLLVVDEAHHLAWSEEAPSREYQVIE
QLAEHIPGVLLLTATPEQLGQQSHFARLRLLDPDRFHDYEEFINEQQKYRPIADAVTLLL
GGERLTDDKLNLLGELINEQDIEPLLKAANSQTEDSEAARQELVTMLMDRHGTSRILFRN
TRNGVKGFPHRVLHQIKLPLPTQYQTAIKVSGIMGAKKSLEARAKDMLYPEQIYQEFEGE
NATWWNFDPRVEWLLNYLIANRNEKVLVICAQAATALQLEQVLREREAIRAAVFHEGLSL
IERDRAAAYFASEEDGAQVLLCSEIGSEGRNFQFACQLVMFDLPFNPDLLEQRIGRLDRI
GQNREIQIMVPYLENTAQAVLVRWYHEGLDAFEHTCPTGRTIYDSGYQELITYLATPSEQ
EGLDEFIHTCRQQHEGLKLQLEQGRDRLLEMHSNGGEHGQELAEIIADQDNDVNLVSFAL
NLFDIVGINQEDRSDNLIVLTPSDHMLVPDFPGLPQDGCTVTFDRQQALSREDAQFVSWE
HPIIRNGLDLILSGETGSCAVSLLKNKALPVGTLLAELVYVVEAQAPKHLQLTRFLPPTP
VRMLMDKNGTNLAAQVEFESFNRQLNAVNRHTSSKLVNAVQQEVHAMLQQAEALVEEQAR
LLIEAARHEADDKLSAELARLEALKAVNPNIRDDEIETLEHNRKMVLENLNQAGWRLDAI
RLVVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgatacagaaagcgaacttggattgggt
actgtcgttgccattgacgtacgcatggtcaccttactgtttcccgcaaccggtgaaaac
cgcctttacgccagaaatgattctccaattacccgtgtcatgtttaatccgggcgatacc
atcactcaccacgaaggctggcagctgaaagtggaagaagtgtctgaggagaacgggctg
attacctacattggtactcgcctggatacagaggaaaccggcgtttccatgcgtgaagtt
ttgctcgatagcaaactgacttttagcaaaccgcaagacagattatttgccggccagatc
gatcgcatggatcggtttgccctgcgttttcgcgcccgtaaataccaaagtgagcagttc
cgcctgccctggagtggtttgcgcggcatccgcgccagcttgatcccacaccaattacat
atcgcctatgaagtgggtcaacgccatgcgccacgcgtcttgctggccgatgaagtaggg
ttgggtaaaactatcgaagcagggatgattatccatcagcaactgctgtcaggccgtgct
gaacgtatcctgattgtggtgccggaaagcttgcaacaccagtggttggtcgaaatgctg
cgccgcttcaatctgcgcttctcattgtttgatgacagccgctattctgaagccctgctc
gacagcaccaatccgtttgaaactgaacaaatggtcatttgctcgctggactttgtgcgc
cgtaataaacagcgtctggaacagttggcggatgcgtcctgggatctgctggtggtggat
gaagcacaccatctggcctggagtgaagaagcgccgagccgcgaatatcaagttattgaa
caattggccgagcatatccccggcgtcttgctgctgaccgcaacaccagagcaactgggc
cagcagagccactttgctcgcttgcgtctgcttgatcctgaccgcttccacgattacgaa
gaatttattaatgagcagcaaaaataccgcccaattgccgatgctgtcacattgctgctg
ggtggtgagcgcttaactgacgataagctgaatctgctcggtgagctgattaacgagcag
gatatcgagccactgctgaaagcggcaaacagccaaactgaagatagcgaagcggcacgt
caggagttggtgaccatgctgatggacagacatggcaccagccgtatcttgttccgtaac
acccgtaatggggtgaaaggcttcccacaccgtgtcttgcatcagattaagctgccactg
ccaactcaataccaaacggcaattaaagtgtcaggcattatgggtgccaagaaaagcctc
gaagcacgagccaaagacatgctttatccagagcaaatctaccaagaattcgaaggcgaa
aacgccacttggtggaactttgacccacgggttgaatggctgcttaactacctgattgct
aaccgcaatgagaaagtgctggttatttgtgcacaagccgccaccgcattgcagcttgaa
caagtgctgcgcgaacgcgaagctatccgtgccgcagtattccatgaaggtttatcactg
attgaacgtgaccgcgcggcggcctattttgcctccgaagaagacggcgcacaggtatta
ttgtgttctgaaatcggctctgaagggcgtaacttccagtttgcctgccaactggtgatg
ttcgatttaccttttaatccggacttgcttgagcaacgtattggtcgtctggataggatc
ggccaaaaccgtgaaatccagataatggtgccgtatctggaaaataccgcgcaggcggta
ctggtacgctggtatcacgaaggtttggatgctttcgagcacacctgcccgacgggccgc
actatttatgacagcggttatcaagaattgattacttacctggcaacgccaagtgagcag
gaagggctggatgaatttatccacacctgccgccagcagcatgaagggctgaaactgcaa
ttggaacagggccgtgaccgcttgctggagatgcactccaacggaggcgaacatgggcaa
gaactggcagaaatcattgcggatcaagacaatgacgttaatttagtcagttttgcgctc
aacctgttcgatattgtcgggatcaaccaggaagatcgcagcgacaatttgattgtgctg
acgccatctgaccatatgctggtgccggatttcccaggattaccacaggatggttgcacg
gtgacatttgatcgccaacaggcactatcgcgcgaagatgctcagtttgtcagttgggaa
cacccgatcatccgtaacggtttggatctgatcctctccggtgagaccggaagctgtgcg
gtttctctgttgaaaaacaaagcattgccggtcggtacactgctcgctgaattggtctat
gtggttgaagcgcaagcaccgaaacacttgcaattgacccgcttcttacccccaaccccc
gtacggatgctgatggacaagaacggcaccaatctggcagcacaagtagaatttgaaagc
tttaatcgtcagttgaatgcagtcaatcgccatacctccagcaaactggtcaacgcggtt
cagcaagaagttcacgccatgttgcaacaagcagaagcactcgttgaagaacaggcgcgt
ttgctgattgaagcagccaggcatgaagcggacgataaattaagtgccgagctggcacgt
ttggaagccctgaaagcagttaaccccaatattcgtgatgacgaaatagagactctggaa
cataaccgtaaaatggtgctggaaaacctcaatcaggcgggttggcgtttggatgccatt
cgtctagtggtggtgacacaccagtaa
DBGET
integrated database retrieval system
