Yimella sp. cx-51: J5M86_06835
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Entry
J5M86_06835 CDS
T07124
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
yim
Yimella sp. cx-51
Pathway
yim03030
DNA replication
yim03410
Base excision repair
yim03420
Nucleotide excision repair
yim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
yim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J5M86_06835 (polA)
03410 Base excision repair
J5M86_06835 (polA)
03420 Nucleotide excision repair
J5M86_06835 (polA)
03440 Homologous recombination
J5M86_06835 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yim03032
]
J5M86_06835 (polA)
03400 DNA repair and recombination proteins [BR:
yim03400
]
J5M86_06835 (polA)
Enzymes [BR:
yim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J5M86_06835 (polA)
DNA replication proteins [BR:
yim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J5M86_06835 (polA)
DNA repair and recombination proteins [BR:
yim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
J5M86_06835 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J5M86_06835 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_5
DNA_pol_lambd_f
HHH
Motif
Other DBs
NCBI-ProteinID:
QTH39304
LinkDB
All DBs
Position
1439809..1442478
Genome browser
AA seq
889 aa
AA seq
DB search
MKRLLLLDGHSLAYRAFFALPAENFSTTTGQHTNAVYGFTSMLINVLRDEEPTHVGVAFD
VSRQTFRTQEYAEYKAGRSATPDEFKGQVSLLHEVLDALRITYVEVEGYEADDVIATLTT
QALADGFDEVLICSGDRDALQLVTDQVTVLYPVRGVSELARMTPAAVEEKYGVLPERYSD
LAALVGESSDNLPGVPGVGPKTAAKWIGLYGDLTGVVAHADQIKGKAGESFRAHLDGVLR
NRRLNELVRDLALPATPQELERKVWDRQEVHTVFDGLEFRVLRDRLFATLEAVTEEADEG
VEVDGEVLAPGVVAEWIGQHLSGKTSAGVEVIGRWVRGSGEAEAVAVSADQQAAYIDLTT
LDERGESALREWLADQARPKVLHDAKPQAQMLAASGLPIEGVISDTALAAYLVRPDQRSY
DLADLVLRYLKRELRADAEVPAQGTLDFGGIDTAAQEAMVRAAAVAELGEALRAQLDNIG
GTDLLAKVELPLTGVLARMERVGIAVDLEAMQQLESDYADGVRQAQLDAYDAIGGEQINL
GSPKQLQVVLFDQLQMPKTKKTKTGYTTDADALTDLYTKTEHPFLEALLRHRDWSRLRVT
VEGLMKSVADDARIHTTYLQTVAATGRLSSVDPNLQNIPIRTESGRRIREAFVVGEAYES
LMSADYSQIEMRIMAHVSGDAGLIEAFRTGEDLHRFVGARVFGVEPEDVTLEMRSKVKAM
SYGLAYGLSAFGLSKQLTISTAEAKDLMDEYFHRFGGVRDYLRSVVDDARLTGYTETMLG
RRRYLPDLTSDNRQRREMAERMALNAPIQGSAADVMKMAMLGVQRALDDTSLKSRMLLQV
HDELVLEIAPGERDHVEALVRDQMGSAVAMDVPLDVSVGVGRSWHEAAH
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcgactgctgctgttggacggacattccctggcctatcgcgccttcttcgcgctc
ccggcggagaacttctcgaccaccactggtcaacacacgaatgcggtgtacgggttcacc
tcgatgttgatcaacgtgttgcgcgacgaggagccgacccacgtcggtgtcgccttcgac
gtgtcccgccagaccttccgcacgcaggagtacgccgagtacaaagccggccgctcggcc
acgcctgatgagttcaaggggcaggtgtcgctgctgcacgaggtactcgacgcgctgcgc
atcacctacgtcgaggtcgagggttacgaggccgacgatgtcatcgccaccctcaccacg
caggcgctggccgacggtttcgacgaggtgctcatctgctccggcgaccgcgacgcgctt
cagttggtgaccgatcaggtcaccgtgctctacccggtgcgcggcgtctccgaactcgcg
cgcatgacgccggccgcggtggaggagaagtacggcgtgctgccggagcgctacagcgac
ctcgcagcgctggtgggggagtcgtccgacaacctgcccggcgtccccggcgtcggcccg
aagaccgcggcgaagtggatcgggctctacggcgacctcaccggagtcgtcgcacacgcc
gaccagatcaagggcaaggcgggcgagtcgttccgtgctcacctcgacggcgtgctgcgc
aaccgtcggctcaacgagttggtgcgcgacctcgccctgccggccaccccgcaagaactc
gagcgcaaggtgtgggaccgccaggaggtgcacaccgtcttcgacggcttggagttccgc
gtgctgcgcgatcggctcttcgccacgctcgaagcggtcaccgaggaagccgacgaaggc
gtcgaggtcgacggcgaagtgttggcgccgggcgtcgtcgccgagtggatcgggcaacac
ctcagcggcaagacatcagcaggtgtggaggtcatcggccggtgggtccgcggcagcggt
gaagcagaggcggtcgcggtctcggctgaccaacaggccgcgtacatcgacctcaccacc
ctcgacgagcgcggcgaatcagcgttgcgtgaatggttggctgaccaagcgcgtccgaag
gtgttgcacgatgcgaaaccgcaggcacagatgcttgcggccagcggtctgccgatcgaa
ggagtcatctccgacactgcgctcgctgcctacctggtgcggcccgaccagcggtcctac
gacctggccgacctcgtgctgcgctacctcaagcgcgaactgcgcgctgacgccgaagtg
cccgcacaaggcaccctcgacttcggtggcatcgacaccgcagcgcaggaggcgatggtg
cgcgccgccgcggtcgccgagctcggcgaagcgctgcgcgcccagctcgacaacatcggc
ggcaccgaccttctcgccaaggtcgaactcccactcaccggcgtcctggccaggatggaa
cgggtcggcatcgctgtcgatctcgaagccatgcagcagctcgagtccgactacgccgac
ggcgtgcgccaagcccagctggacgcctacgacgccatcggtggcgagcagatcaacctc
ggctcgccgaagcagttgcaggtggtgctcttcgaccagttgcagatgccgaagaccaag
aagaccaagaccggctacaccaccgacgccgacgcgctcaccgatctctacaccaagacc
gagcaccccttccttgaggccctgctgcggcaccgcgactggtcacgactgcgcgtcacc
gtcgagggcctcatgaagtcggtggccgacgacgcccgcatccacaccacctatctgcag
accgtcgccgccaccgggcgtctctcctcggtcgaccccaacctgcagaacatcccgatc
cgcaccgaatccggccgtcgcatccgcgaggcgttcgtcgtcggcgaagcctacgagtcg
ctcatgtccgccgactacagccaaatcgagatgcgcatcatggcccacgtctccggcgac
gcaggactcatcgaagccttccgcaccggcgaagacctccaccgattcgttggtgcgcgg
gttttcggagtcgagcccgaagatgtcaccctcgagatgaggtcgaaggtaaaagcgatg
tcctacggcctcgcctacggactgtcggcgttcggcctgtcgaagcagctcaccatcagc
acggcagaggccaaagacctgatggacgagtacttccaccgcttcgggggagtgcgcgac
tacttgcgctccgtcgtcgacgacgctcgcctgaccggttacaccgaaacgatgctcggc
cggcgccgctacctgcccgacctcacttccgacaaccgccaacgtcgcgagatggccgaa
cgcatggccctcaacgcacccatccagggctcggccgccgacgtcatgaagatggccatg
ctcggggtgcagcgcgccctcgacgacacctcgttgaagtcgcggatgctgttgcaggta
cacgacgaactcgtgctcgagatcgcaccgggggagcgtgaccacgttgaggcgttggtg
cgcgaccagatgggctcggcggtcgcgatggacgtgccgctcgacgtcagcgtcggcgtg
gggcggtcatggcacgaggccgcgcactga
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