Yersinia intermedia: CH53_3007
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Entry
CH53_3007 CDS
T03608
Name
(GenBank) RNA pseudouridylate synthase family protein
KO
K06177
tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:
5.4.99.28
5.4.99.29
]
Organism
yin
Yersinia intermedia
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
yin03009
]
CH53_3007
03016 Transfer RNA biogenesis [BR:
yin03016
]
CH53_3007
Enzymes [BR:
yin01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.28 tRNA pseudouridine32 synthase
CH53_3007
5.4.99.29 23S rRNA pseudouridine746 synthase
CH53_3007
Ribosome biogenesis [BR:
yin03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CH53_3007
Transfer RNA biogenesis [BR:
yin03016
]
Prokaryotic type
tRNA modification factors
Psudouridine synthases
CH53_3007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
AJJ21278
LinkDB
All DBs
Position
3377698..3378396
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AA seq
232 aa
AA seq
DB search
MSTIIDTFIAPPCHDKIEILYQDDHLVLINKPAGLLSLSGKNPQNLDSVHHRLVQIFPGC
TLVHRLDFGTSGLMVIARNKVINAALCQQFSQRTVTKVYSALLCGHLDDNEGVIDAAIAK
DPALFPLMSICSIHGKPARSHYQVVERFYHELEDRTLLPLTRVQLTPETGRTHQLRIHCQ
QLGHPILGCDLYGGRLLPGTERTPRLMLHASELHFNHPIGEEWIKARNTSPF
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgattattgatacctttattgcccctccgtgccatgacaagatagagattctc
tatcaggacgatcacctggtgcttatcaataaacccgcagggctgctcagcctctcgggg
aaaaatccacaaaatctcgattcggtacatcatcggctggtacagatattccccggctgt
accctggtccatcgccttgatttcggtacttccgggctgatggtgattgcccgcaataag
gttattaacgctgccctctgccaacagttcagtcagcgcacagtgaccaaggtgtacagc
gcactgctctgtggacatctggacgacaacgaaggggtgatagacgctgcgattgccaaa
gacccggcgctgttcccgctgatgtctatttgttcaatccacggtaagcccgctcgttcc
cactatcaggttgttgagcgtttttatcatgagttggaagaccgtacgttactgccattg
acgcgggtacagctaaccccggagaccgggcgcacccatcaactacgcattcactgccag
cagttgggccaccctattttgggctgcgacctgtatggcggtcgcctgctgccaggtacc
gaacggactccgcggctgatgctgcacgccagtgagttacattttaatcatcccattggc
gaagagtggatcaaagcccgtaataccagcccgttctga
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