Yarrowia lipolytica: YALI0D21384g
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Entry
YALI0D21384g CDS
T01033
Name
(RefSeq) YALI0D21384p
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
yli
Yarrowia lipolytica
Pathway
yli03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
yli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
YALI0D21384g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yli03400
]
YALI0D21384g
Enzymes [BR:
yli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
YALI0D21384g
DNA repair and recombination proteins [BR:
yli03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
YALI0D21384g
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
BRCT_2
BRCT
Motif
Other DBs
NCBI-GeneID:
2911076
NCBI-ProteinID:
XP_503109
UniProt:
Q6C8A3
LinkDB
All DBs
Position
D:complement(2708566..2711436)
Genome browser
AA seq
956 aa
AA seq
DB search
MSSERRPELEETAVDPATGSAASRKFSIVQDAVETTIVAPTNHGPSPRFSTLVRNLFEPL
VNLSAVVAALRKKPTEAKAHIASQFIKGWVEEVGKDIYPAFRLILPDKDRERAVYGLKEK
ALGRLWVKVLNLAKDSPDAKALSEWKQGGNESAGNFSKRCYEVLSKRTSLTDYGHMTVDE
VNERLDLLADGETDQAKQIEILTYFYKHMNATELKWLVNIILRQMKMNATEKVFFEPWHP
DAESLFNVTASLKRVCWELTDPTKRLTSAEAQVSLFACFMPQIAAFPKYSGQDIAGKHFK
GRPFYIEEKIDGERMQMHMSEYGNKFHWWSRRSKDFTETYGNSLDDASGSLTKRLRGIIN
PKVRNCVLDGEMVAYDPATKKIIPFGTLRTANRNEQNDLNLTKPMFMVFDILLLNDKPLV
DYTLAERKRTLRTIFARTDNETVGQEGVLEVLPYTEATTAAEIETCMRKIIAESSEGLVI
KDPTSVYRVNTRDDSWLKMKPEYMSEFGEKLDVVIIGGYYGSGKRGSILSSYLCGLRADG
SDQFWSFFKVGGGLTAGDYQAIRTKTEGKWKRWDKNDKPKNVLLAGPNGDLERPDVWIEP
SDSVVVEVKAASVVASDQYKVGLCLRFPRFRALRLDKTWEDGLTISQFAELRQTVEMEAE
NKELELEDRKRRNAGPGRGAKRLKLANVSSDEDELGTDERPTSVFKATSFAVLSDMSSPR
YMSKAAVENLIKKHGGTVFQTVEGPHTIPVADTRTIKVQALTKRVHGVDVIRPNWLLDCI
NEEKLVALEPRNLLESSAETLALAKTNVDEFGDSYTRPLTYKEMQEVLRFMDQFDLDQTN
PPDLMMEVLETNDGAVPKGMLFYGKKVYMSTSNMDTVALETQFRAYDALRCLQFGGANLV
TDMKDLVVAVAKTEEEAKELRRVSSEQVFPFRVVSIKWVEESWKNGTVEIEDDYPL
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcgagcggcgacccgagctggaagaaactgccgttgacccggcaacgggctct
gcggcgtctcgaaagttttccattgtccaggacgcggtggaaacgacaattgtggcaccg
accaaccatgggccctctcctcggttttccactctcgtccgcaacctgttcgagccgctg
gtcaatctctcggccgtggttgcagctctgcgcaagaaaccgaccgaggccaaggctcac
attgcctctcagttcatcaaggggtgggtagaggaggttggcaaggacatttatcctgcc
ttccgtctcatcttaccggacaaagaccgagaacgggccgtgtacgggctcaaggaaaag
gcgctgggccgtctgtgggtcaaggtgctcaatttggccaaagattcgcccgatgccaag
gcgttgagtgaatggaaacaaggaggcaacgaaagcgccggcaacttctccaaacggtgc
tacgaagtgctgagcaagcgaaccagtcttaccgactacggccatatgaccgtggacgag
gtcaatgagcgactggatcttttggccgacggagaaacggaccaggccaagcagattgag
attctaacctacttctacaagcacatgaacgccacggagctcaaatggctggtgaatatc
attttgcggcagatgaagatgaacgcgacggaaaaggtgttttttgagccctggcatccc
gatgccgagtccttgttcaacgtcactgccagtttgaaacgcgtctgctgggaattgaca
gatcctactaaacggctgacttccgcagaggcccaagtgtcgttattcgcctgtttcatg
ccgcaaatcgccgcgtttccgaaatactcgggccaggacattgccggaaaacacttcaag
ggcagaccgttctacattgaagaaaagattgacggagagagaatgcagatgcacatgagc
gaatatggcaacaagttccactggtggagcagacggtccaaggacttcaccgagacgtat
ggaaactctctggatgacgcttctggctctctgaccaaacgtcttagaggtatcatcaac
cccaaagtcagaaactgtgtgctggacggcgaaatggtggcttatgatcctgccaccaag
aagattatcccgtttggaactctgagaacggccaaccgaaacgaacagaacgacctgaac
ctcactaaacccatgttcatggtatttgacattcttttactcaacgataagcctctggtg
gactacactctagctgagcgcaagagaacacttcggaccatctttgcaaggactgataac
gagactgtgggtcaggaaggagttctggaagtgttaccctacaccgaggccaccaccgct
gctgaaatcgagacttgcatgcgaaagatcattgcagagtcgtccgaaggactggtcatc
aaagaccctacttctgtctacagggtgaacactcgagacgattcgtggctgaaaatgaaa
cctgagtacatgtctgaattcggcgagaagctcgatgttgtcattattggaggctactac
ggttcaggaaaacgaggcagtattctttcctcgtatctttgcggtcttcgggctgatgga
tcggaccagttttggtcctttttcaaagtggggggtggcctgactgcgggtgactaccag
gctattcgcaccaagaccgagggcaaatggaaacgatgggacaagaacgacaagcccaaa
aacgtgcttctggcgggccccaatggcgacctagaacgtccagatgtctggatcgagccg
tcggacagtgtggtggtcgaggtcaaggctgcttcagtagttgctagtgaccagtacaag
gtggggttgtgtctgcggtttcctagattccgagccctgcgactggataagacatgggaa
gacggactgaccatttctcagtttgcggagctcagacaaacagttgaaatggaggctgaa
aacaaggagttggagctggaggacagaaagagacgcaatgcaggtcccggaagaggggcc
aaacggctgaaactggcaaacgtgtcttctgacgaagacgagctgggtactgatgaaagg
ccgacgtctgttttcaaagccacgtcttttgctgtgctctcagacatgtcttctcctcgg
tacatgtctaaagccgcggtggaaaatctcatcaagaagcacggaggtactgtgtttcag
acggtcgaaggaccacacacgattcccgttgcagacacccgaactatcaaggtccaggct
ctgactaaacgggtccatggtgtggatgtgattcgacccaactggctgttggattgcatc
aacgaggagaaactagtggctctggagccgcgaaatctgctggagtcgagtgccgaaaca
cttgcacttgccaagacaaatgtcgacgagtttggagacagttacacccgccctctgacc
tacaaagagatgcaggaggtgttgcggttcatggaccagtttgatctggatcaaacaaac
ccccctgacttgatgatggaggttctggaaaccaatgatggagccgtgcccaagggaatg
ctcttctatggcaaaaaggtgtacatgtcgacttccaatatggacactgttgctctggag
acccagttcagagcctacgacgccttgagatgcctgcaatttggaggagccaatctcgtg
accgacatgaaagacctggtggtggcggttgccaaaacggaagaggaggctaaagagctg
agaagggtgtcctcggaacaggtgtttccgttcagagtggtgtccatcaagtgggtcgag
gagagctggaagaacggaacggtggagattgaggacgattaccctctataa
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