KEGG   Yarrowia lipolytica: YALI0F01034g
Entry
YALI0F01034g      CDS       T01033                                 
Name
(RefSeq) YALI0F01034p
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
yli  Yarrowia lipolytica
Pathway
yli03030  DNA replication
yli03410  Base excision repair
yli03420  Nucleotide excision repair
yli03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:yli00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    YALI0F01034g
   03410 Base excision repair
    YALI0F01034g
   03420 Nucleotide excision repair
    YALI0F01034g
   03430 Mismatch repair
    YALI0F01034g
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:yli03032]
    YALI0F01034g
   03400 DNA repair and recombination proteins [BR:yli03400]
    YALI0F01034g
Enzymes [BR:yli01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     YALI0F01034g
    6.5.1.6  DNA ligase (ATP or NAD+)
     YALI0F01034g
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     YALI0F01034g
DNA replication proteins [BR:yli03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    YALI0F01034g
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     YALI0F01034g
DNA repair and recombination proteins [BR:yli03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     YALI0F01034g
   NER (nucleotide excision repair)
    Other NER factors
     YALI0F01034g
   MMR (mismatch excision repair)
    Other MMR factors
     YALI0F01034g
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 2908208
NCBI-ProteinID: XP_504846
UniProt: Q6C3B6
LinkDB
Position
F:complement(join(167513..169625,169675..169778))
AA seq 738 aa
MQLNTIKPRRVMFLSFRTPTTRRVVFNMAKQQTLNFFGTKRKASEEVEDKKVAKVKIETK
TTKSPEPETSSKQSPKSPKKQSPKSSNKELSASKQFLKSSTSTSSLPSTKTVCAETAKKL
AEEGSGHTHGPLLYRTIVDTFEKIEATTKRLEITAHCAALFLSVLKSHPQMMATVVYLCI
NRLGPDYEGLELGLGESLLMKSIAESTGRTPAYVKTEYQKLGDLGKVAQSSKSNQRAMFK
PEPLKAANVFDTFREIAQTTGKDSQNAKINMIKRMMGACQGNEAKFIIRSLEGKLRIGLA
EKSVLVSLSQAFVTFEAENKGKKVNPDDITAGEEMIRDVFCQLPNYALIIDAILENGIMR
LSETCKISTGVPLKPMLAKPTKSISEVLDRFQDTEFTCEYKYDGERAQIHKTESGEMFVY
SRNSEDMTVRYPDLVSIIPKFAGEAKSFILDCEAVAWDRKQNKILPFQVLSTRKRKNVNE
EEITVRVCIFAFDILYLNGESLLTLPLAERRQKLKEAFTEVPGEFLFAKSMDTSNVEEIQ
TFLDQSIKDSCEGLMVKLLEGKESGYEPSKRSRNWLKVKKDYIDGIGDSLDLVILGGYFG
KGKRSQWYGAFLLGVYNQDSEEFETVCKTATGFSEEMLQKMYDKLKPTVIETPHSDVSYD
STPANLPDVWFDPSTVIEILAADLSLSPVYKAGIDQMDRGISLRFPRFIRVRDDKGIHDA
TSSDQIVEMYQNQAALVG
NT seq 2217 nt   +upstreamnt  +downstreamnt
atgcagctaaatacaattaaaccgcgtcgcgtcatgtttctctcttttcgcaccccgaca
acgcgtcgagtagtattcaacatggccaagcagcagacgttaaattttttcggcactaag
agaaaggcttcggaggaggtggaggataagaaggtggctaaagtgaagattgagacgaag
accaccaaatctcctgagcccgagacatccagcaagcagtcgccaaagtcgcctaagaag
caatcaccaaagtcgtcaaacaaggagttgtcagcctcgaaacaattcctcaagtcttct
acatcgacaagttcgttaccgtctaccaaaaccgtctgtgctgaaacagccaagaaacta
gctgaggaaggatcgggacatacccatggcccgttgctgtaccgaaccattgtggacaca
tttgaaaagatcgaagcgactactaaacggctggaaatcacggcccattgtgccgctctg
tttttgtcggttctcaagagccatcctcagatgatggccactgtggtctacctatgcatc
aaccgacttggtcccgactacgagggtctcgaattgggcctcggagagtcgcttctgatg
aaatccattgccgaaagtaccggacgaacgcctgcctacgtcaagaccgagtaccagaaa
ctcggtgatctgggcaaggtggcccagtcgtccaagagcaaccagcgagccatgtttaag
cccgaacctctcaaggctgccaacgtttttgatacctttcgagaaatcgcccagacaaca
ggtaaagattctcagaacgccaaaatcaacatgatcaaacgaatgatgggggcctgtcag
ggaaacgaggccaagtttatcattcgaagcctggagggcaaattgcgtattggactggct
gagaagtcggtgctggtgtcgctttctcaagcctttgtcacctttgaagctgagaacaaa
ggcaagaaggtgaacccggatgatatcactgcaggagaagaaatgattcgagatgtgttc
tgccagctgcccaactacgcgctcatcatcgacgccattctggaaaacggaatcatgcgc
ctttctgaaacttgcaagatttccactggtgttcctctcaagcctatgttggccaaaccc
accaagtctatctcagaggtcctggatcgcttccaagacacagaattcacttgcgagtac
aaatacgacggagaacgagctcagatccataaaaccgagtccggggaaatgtttgtgtat
tctcgaaactcggaagatatgactgtccgttaccctgacttggtttccatcattcccaag
tttgccggagaggccaaatccttcattctcgattgcgaggcagttgcctgggatagaaag
caaaacaaaatcctgccgttccaggttctgtcaactcgaaagcggaagaacgtgaacgag
gaagaaattactgtcagagtgtgtatattcgcattcgacattctgtacctcaatggcgag
tctcttttgaccctacctcttgccgaacgacgtcagaaactcaaggaggccttcactgag
gtgccgggcgagtttctgtttgccaagtcgatggacacgtccaatgttgaggagattcag
acattcctggaccagtccatcaaggactcgtgcgagggactgatggtgaagcttctggag
ggtaaggagtctggatatgagccgtccaagcggtcgcgaaactggctcaaggtcaagaag
gactacattgacggaattggcgactctctggaccttgttattctcggaggatactttggc
aagggcaaacggtctcagtggtatggagcattcttgttgggtgtgtataatcaggactcg
gaggagttcgagacagtctgcaagacagccacgggcttctcggaagaaatgctgcagaag
atgtacgataaactaaaacccacggtgatcgagaccccccacagtgatgtttcgtacgac
tccacgcctgctaacttgccagacgtgtggtttgatccttctactgtgattgagattctg
gcggccgacttgtctctgtctccggtttacaaagctggcattgaccagatggaccgaggt
atttcacttcggttccctcgtttcattcgagtgagagacgacaagggtattcatgatgcc
accagcagtgaccagattgtcgaaatgtaccagaaccaggctgcgctggtgggttag

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