Yersinia mollaretii: HRD69_08080
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Entry
HRD69_08080 CDS
T06716
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ymo
Yersinia mollaretii
Pathway
ymo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ymo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HRD69_08080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ymo03019
]
HRD69_08080
03009 Ribosome biogenesis [BR:
ymo03009
]
HRD69_08080
Enzymes [BR:
ymo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HRD69_08080
Messenger RNA biogenesis [BR:
ymo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HRD69_08080
Ribosome biogenesis [BR:
ymo03009
]
Prokaryotic type
rRNA helicases
HRD69_08080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QKJ02960
LinkDB
All DBs
Position
1812493..1814478
Genome browser
AA seq
661 aa
AA seq
DB search
MTTELETSFADLGLSAPILSALTSLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAA
FGLPLLHNIKAELKAPQVLVLAPTRELAIQVAEALSSFSKDINGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA
EHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFWRVGGGYNKKEALVR
FLESEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLDRLKDGRLDI
LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLQ
NIERTMKLTIPEVQLPNAELLGERRLAQFAAKVGQQLESSDLDLYRALLAKLQPEEEFDL
ETLAAALLKMAQGERPLILPPEAPRRPQREFNSRDDRGSDRGNDRGRDRGDSRREPRADS
RDGGERPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASH
STIELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGERRGGPRAAG
GERRDGAGAPPRRSFGSDRAPAGNGGGERRGSRDGQRSAAPRRDDAAAPAAAPARRRFGD
A
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgatctggggctgtccgctcctattctttcc
gctctaactagccttggttatgaaaaaccatcgccaatccagttagaatgtatcccacac
ctgttaaacggccgtgatgttctcggcatggcacaaacaggcagtggcaaaacagccgcg
tttggtctgccgctgttacacaatattaaagctgagctgaaagccccacaggttctggta
ttagcaccgacccgtgagttggctattcaggtcgccgaagcactctctagcttctctaaa
gacattaatggcgtcaacgtagtggccctgtacggtggccagcgttatgacgttcaatta
cgcgctttgcgccaaggtccacaaattgttgttggcaccccaggtcgtctgcttgaccac
ctgaaacgcggcacccttaacttgtccaacctgagcggtttagtgttggatgaagcagat
gaaatgctgcgcatgggctttatcgaagacgttgaaactatcatggcgcagatcccggct
gaacatcagaccgcgctgttctctgcaactatgccagaagcgattcgccgtattacccgt
cgcttcatgaaagatccacaggaagtgcgcattcagtccagtgtcactacccgcccggac
atcagccagagtttctggagagtgggtggcggttataacaaaaaagaagcgttggttcgt
ttcttggaatctgaagatttcgacgcagccatcatcttcgtgcgtaccaaaaacgcgacg
ctggaagttgcagaagccttggaacgcagcggttatagcagtgccgcactgaacggcgac
atgaaccagtctttacgtgagcagacactggatcgcctgaaagatggccgtctggatatt
ctgatcgccactgacgttgcggctcgtggtttggacgtagagcgcatcagcttggtagta
aactatgatatccctatggattcagagtcttatgttcaccgtatcggccgtaccggtcgt
gcgggccgtgcgggtcgtgcgttgctgttcgttgagaaccgcgaacgtcgcctgttgcag
aacattgaacgcaccatgaaactgactatcccagaagttcagttgccgaatgccgaactg
ctgggcgaacgtcgcttagcgcagtttgctgctaaagttggccaacagctggaaagcagt
gatttggatctgtaccgtgcattgctggctaaactgcaaccagaagaagagtttgatctc
gaaacgctggctgctgcgctgctgaaaatggcacagggcgaacgtcctctgattctgcca
ccagaagcacctcgtcgtccgcaacgtgaattcaattctcgtgatgaccgtgggagcgat
cgtggtaatgatcgtggccgtgaccgtggtgacagccgtcgtgagcctcgcgctgatagc
cgtgatggtggcgagcgtccagcacgtcgcgaacgccgtgatgttggtgagatggagctg
taccgcattgaagtgggccgtgatgatggtgttgaagttcgtcatatcgttggcgctatc
gctaacgaaggtgatatcagcagccgttatatcggtaacatcaagctgtttgcttctcac
tcaactatcgagctgccaaaaggtatgccgggcgaaatgttatctcacttcacccgtacc
cgtatcctgaacaagccgctgaacatgcagctgttgggtgatgcacagccacacgaacgt
cgtgagcgtccagccggcggtaacggtggtgagcgtcgtggcggtcctcgtgctgcaggt
ggtgaacgtcgtgatggcgcaggtgctcctcctcgtcgttcattcggcagcgaccgtgct
ccagctggtaatggtggtggtgaacgtcgtggtagccgtgatggtcagcgttcagctgca
ccacgtcgtgatgatgctgctgcacctgccgcagcgccagcacgtcgtcgtttcggtgat
gcataa
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