Yersinia pestis D106004: YPD4_1963
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Entry
YPD4_1963 CDS
T01832
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
ypd
Yersinia pestis D106004
Brite
KEGG Orthology (KO) [BR:
ypd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ypd03016
]
YPD4_1963 (rnb)
Enzymes [BR:
ypd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
YPD4_1963 (rnb)
Transfer RNA biogenesis [BR:
ypd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
YPD4_1963 (rnb)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
CFSR
Motif
Other DBs
NCBI-ProteinID:
ACY58870
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All DBs
Position
complement(2507512..2509446)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHTQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPQMKKVMHGDRI
IATLHTDKDREIAEPETLVEPFLSRFVGRVQRKDDRLSIVPDHPLLRDAIQCRPVRELTH
SFQNGDWAVAEMCRHPLKGDRAFQADLTAFITNGEDHFVPWWVTLARHNLEREAPAMVES
ALNDAELEREDLTALNFVTIDSASTEDMDDALFVQDNGDGSWLLTIAIADPTAYVVENSE
LDLTARKRAFTNYLPGFNIPMLPRDLSDNLCSLRPNERRPVLVCRVTITEEGTLSNDIRF
SAAWVESKAKLVYDDVSDWLEGNNRWQPQDTAIAEQITLLKRICDARSNWRQQHALVFKD
RPDYRFLLGEKGEVLDIIVEHRRIANRIVEECMIAANVCAALALREHLGFGIYNVHTGFD
PALVEQAASVLKANGVGADPQALLTLPGFCELRRHLDALPTQFLDSRIRRFQTFAEISTV
PGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAMITGQQAEKPQEEITVQLAERRRLNRM
AERDVGDWLYARYLQPQAGTDTRFTAEIIDITRGGLRVRLLDNGAVAFIPAPFIHAVRDE
VVCSQETGTVQIKGETVYSQSDKIEVRIAEVRMETRNVIARPVA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctggcgcagctaaaacagcaacttcacactcagacccca
cgcgttgaaggcgtcgttaaaggtactgagaaaggctttggctttcttgaggtagatggg
cagaaaagttactttattccgcctccgcagatgaagaaggtcatgcacggcgatcgcatt
attgccaccctgcatacggataaggatcgtgaaattgctgaacctgaaacattggttgag
ccatttttatcccgctttgttggccgggtgcaacgaaaagatgatcgtctgtctatcgtg
cccgaccaccctttattacgtgatgctattcaatgccgcccagtacgtgaactgacgcat
agcttccaaaacggtgattgggcagtggctgagatgtgccgccacccattaaaaggcgac
cgcgcctttcaggctgacctaaccgcgtttattaccaatggtgaagaccacttcgttcct
tggtgggtaacactggctcgccataaccttgagcgtgaagcccctgctatggtcgaatcg
gccttaaatgacgccgagcttgagcgtgaagacttaaccgcacttaattttgtcactatc
gacagcgccagcactgaagacatggatgatgcgctgtttgtccaagacaatggcgacggt
tcatggttattgaccattgccattgcagacccaacagcttacgtcgtcgaaaacagtgaa
ttggatttaaccgcccgtaagcgtgcttttaccaattatctgccgggttttaacatcccg
atgcttccgcgtgatttgtccgacaacctctgttcactgcgcccaaatgaacgtcgccca
gtattggtttgccgtgtgacgatcacagaagaagggacgctaagtaacgatattcgtttc
tccgctgcttgggttgaatcaaaagccaaactggtttacgacgatgtctctgactggttg
gaaggaaataatcgctggcagccacaagataccgctattgcagagcagattacgttactg
aaacgtatctgtgacgcccgtagcaactggcgtcaacaacatgcgctggtctttaaagac
cgcccagactatcgcttcctgttgggtgaaaaaggcgaagtgctggatatcattgttgag
catcgtcgtatcgccaaccgcattgtagaagagtgtatgattgcggcgaacgtctgtgcg
gcattggcgttacgggaacacctcggttttggtatttataacgtgcataccggttttgac
ccggcattagtcgaacaagcggctagcgtattgaaagccaatggtgttggtgccgatcct
caagccctgctgacgttacccggtttctgtgagttacgccgtcaccttgatgccctgcca
acacagttcctcgacagccgtattcgccgtttccagacatttgctgaaattagtactgtc
cccggtccgcattttggcttggggcttgaagcctatgccacctggacatctccaatccgt
aaatacggcgacatggtcaatcatcgcctgctgaaagcgatgattactggtcaacaagca
gaaaaaccacaagaagagatcacggtccaattggctgaacgtcgccgcctgaatcgcatg
gctgaacgtgatgtcggtgattggttgtatgcccgttatctgcaaccacaagcaggaact
gacactcgtttcacggcagagattattgatatcacccgcggtggcttgcgtgtgcgttta
ctggataacggtgccgttgcctttattcctgcgccgtttattcacgcggtgcgtgatgaa
gtggtctgcagccaggaaaccggtactgtgcagatcaaaggcgaaacagtttatagccaa
agtgacaaaatcgaggtacgtattgcggaagttcgcatggaaacccgtaatgtcattgct
cgcccagtagcttaa
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