Yersinia pestis Harbin35: CH55_3947
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Entry
CH55_3947 CDS
T03717
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ypj
Yersinia pestis Harbin35
Pathway
ypj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ypj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH55_3947
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ypj03019
]
CH55_3947
Enzymes [BR:
ypj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CH55_3947
Messenger RNA biogenesis [BR:
ypj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CH55_3947
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
AJK09334
LinkDB
All DBs
Position
4306262..4307617
Genome browser
AA seq
451 aa
AA seq
DB search
MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM
KLRGGVDILVATHGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMI
GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAAGRG
DSRNSRPRSQADGQRRPAGPSSRGRSRNPGE
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcctaaacgccgacatcctgcgtgctgttgaagagcagggc
taccttgtgccgacgccaattcaacgtcaggcaatccctgtagtactggaaggccgcgat
ttgatggccagtgcgcaaacgggtacgggtaaaaccgctggtttcaccttgccgctattg
caactgcttagccaagatcaacaacccattaagggccgccgtccggtacgagcattgatt
ttgacgccaacccgtgagctggccgcgcagattgacgaaaacgtacagagttatagcaaa
tacctgaaacttcgctcactggtggtatttggtggcgttagcattaatccgcagatgatg
aaattgcgtggtggcgtcgatattttagtcgcgacacatggccgtttactggatctggaa
catcaaaacgcggttgatttgtccaaaattgaaattttagtattggacgaagctgaccgt
atgctggatatgggctttattcacgatatccgccgtgtattagccaaattaccggctaaa
cgtcagaatttgctgttctctgccaccttctctgatgagattaaagggctggccagcaaa
ttgttgcacaacccagcctctgttgaagtggctcgccgtaatacggcgtcagagcagatc
gcccaaagcgttcactttgtcgataaaaaccgtaagcgtgagctgttgtctcagatgatt
ggcgaaggtaactggcagcaagtgctggtgtttaaccgcactaagcacggcgcgaaccat
ttagctgaacagttaaataaagacggcattactgcggcggcaatccacggtaataaaagt
cagggcgcacgtactcgtgcactggccgattttaaagacggtaaaatccgtgtgttggtc
gcgacggatatcgctgcccgtggtctggatatcgaccagttacctcacgtggttaactat
gaattgccaaacgttccagaagattacgttcaccgtattggccgtactggccgcgcggaa
cggaccggggaagcgatttcactggtttgtgtcgatgaacataaactgctgcgtgatatt
gaacgtttattaaaacgtgaaattccacgtatcgcacttgatggctatgagccggatcca
agcattaaagctgatccaattcaaaatggccgtcagggccgtggtgcacaacgtccagga
atgggccgtggcagcagcgcgggtcgtccgcagaatgggggcggtgcagcaggtcgcggt
gatagccgcaacagccgtccacgcagccaggctgatggtcaacgccgtccggcaggccca
tcgtctcgcggtcgtagccgtaatccaggcgaataa
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