KEGG   Zhongshania aliphaticivorans: AZF00_05550Help
Entry
AZF00_05550       CDS       T04315                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
zal  Zhongshania aliphaticivorans
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:zal00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    AZF00_05550
   03410 Base excision repair
    AZF00_05550
   03420 Nucleotide excision repair
    AZF00_05550
   03430 Mismatch repair
    AZF00_05550
Enzymes [BR:zal01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AZF00_05550
    6.5.1.6  DNA ligase (ATP or NAD+)
     AZF00_05550
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     AZF00_05550
DNA replication proteins [BR:zal03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    AZF00_05550
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     AZF00_05550
DNA repair and recombination proteins [BR:zal03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AZF00_05550
   NER (nucleotide excision repair)
    Other NER factors
     AZF00_05550
   MMR (mismatch exicision repair)
    Other MMR factors
     AZF00_05550
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(1273802..1274671)
Genome map
AA seq 289 aa AA seqDB search
MQRKLTQVIFGLLALCSINLVHADASLTAQTTQKPALMLAKPYRSDIELKHYWISEKLDG
VRAYWDGTQLISRQGNRFSAPDWFTQGFPKQALDGELWMGRNRFAEVSGAVRRQIPDPAQ
WQKIRFMVFDSPGETGDFDHRLQALRVLFAQLNSPSIALIEQYKIDDETALMQALDQIIA
NGGEGLMLHLGSAPYRGIRSDDLLKLKRFSDAEAVVIGHIPGKGKFSGMLGAVLVKMPDG
REFKIGSGFSDQQRRHPPAIGSTISYKYQGTTASGLPRFASFFRTRNDF
NT seq 870 nt NT seq  +upstreamnt  +downstreamnt
atgcagcgcaaactcacccaagtcattttcggcttactcgcactctgcagtatcaatcta
gttcacgcagacgcgtcactaacagcgcaaacaacgcaaaaacctgcccttatgctggca
aaaccctaccgcagcgacattgagcttaagcattactggatcagtgaaaaactcgatggc
gtcagagcctattgggacggcactcagcttatttctcggcaaggcaaccgcttttcagca
ccggactggtttacccaaggcttccctaagcaagcattagatggcgagttgtggatgggc
cgcaatcgttttgcggaggtctccggcgcggtgaggcggcaaattcccgatccagcccaa
tggcaaaagatacgctttatggtgtttgactcgcccggcgaaacaggagactttgatcac
cggctgcaggcgctaagggtattgtttgctcaactgaatagtccctcaatcgccttgata
gaacagtataaaatcgatgacgaaacggcgctgatgcaagcgctcgatcagattatcgcc
aacggcggtgaaggcttaatgctgcatttaggcagcgcaccctaccgaggtattcgcagt
gatgatttattaaagctcaagcgctttagcgacgccgaagcggtcgttattggccacatt
ccgggcaaggggaaattcagcgggatgcttggcgcggtgttagtgaaaatgccagatggc
cgggagttcaaaataggttctggctttagtgaccagcagcgtcgtcacccgcccgcgatt
ggcagcaccattagctataaataccaaggtactacggcgagcggcttaccgcggtttgcc
agcttttttcggacgcgcaatgatttttaa

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