Zalophus californianus (California sea lion): 113907859
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Entry
113907859 CDS
T07874
Symbol
COL1A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca04151
PI3K-Akt signaling pathway
zca04510
Focal adhesion
zca04512
ECM-receptor interaction
zca04611
Platelet activation
zca04820
Cytoskeleton in muscle cells
zca04926
Relaxin signaling pathway
zca04933
AGE-RAGE signaling pathway in diabetic complications
zca04974
Protein digestion and absorption
zca05146
Amoebiasis
zca05165
Human papillomavirus infection
zca05205
Proteoglycans in cancer
zca05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
113907859 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113907859 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113907859 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113907859 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
113907859 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
113907859 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
113907859 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
113907859 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
113907859 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
113907859 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
113907859 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
113907859 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
zca00536
]
113907859 (COL1A1)
Glycosaminoglycan binding proteins [BR:
zca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113907859 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
113907859
NCBI-ProteinID:
XP_027423360
UniProt:
A0A6J2AUW8
LinkDB
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Position
16:35803060..35819154
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AA seq
1460 aa
AA seq
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MFSFVDLRLLLFLAATALLTRGQEEGQEEDIPPVTCVQNGLRYYDRDVWKPEACRICVCD
NGNVLCDDVICDETKNCPGAQVPPGECCPVCPDGEASPTDQETTGVEGPKGDTGPRGPRG
PAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQMSYGYDEKSTGGISVPGPMGPS
GPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGER
GPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPR
GLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGARGSE
GPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPS
GPPGPKGNSGEPGAPGNKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPTGLPGPP
GERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP
GSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPP
GAVGPAGKDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVP
GDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAP
GLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGEA
GPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA
GPTGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE
GGKGPRGETGPAGRPGEVGPPXPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLP
GQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGSPGAEGSP
GRDGSPGPKGDRGETGPSGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPVGAR
GPSGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPXGASGPAGPRGPP
GSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSGGFDFSFLPQP
PQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKM
CHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPHVAQKNWYISKNPKDKRHV
WYGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNL
KKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAP
LDVGAPDQEFGMDVGPVCFL
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcttcttagcggccaccgccctcctgacg
cgcggccaagaggagggccaagaagaagacatcccaccagtcacctgcgtacagaacggc
ctcaggtactatgaccgagacgtttggaaacccgaggcctgtcggatctgtgtctgcgac
aacggcaacgtgttgtgcgatgacgtgatctgcgacgaaaccaagaactgtcccggcgcc
caagtccccccgggcgagtgctgccccgtctgccccgacggcgaggcgtctcctaccgac
caagaaaccacaggagtcgagggacccaagggagacactggcccccgaggtccaaggggt
cctgccggcccccctggccgagatggcatccccggacagcctggacttcccggacccccc
ggacctcccggaccccccggaccccctggcctcggaggaaactttgctccccaaatgtct
tatggctacgatgagaaatcaactggaggaatctccgtgcctggccccatgggtccttct
ggtcctcgtggtctccctggcccccccggtgcacctggtccccaaggtttccagggcccc
cctggtgagcccggcgagcctggagcctcaggtcccatgggtccccgtggtccccctggc
ccccctggcaagaatggagatgatggtgaagccggaaagcctggtcgtcctggtgagcgt
ggaccgcctggacctcagggtgctcggggattgcctggaacagctggccttcctggaatg
aagggacacagaggtttcagtggtttggacggtgccaagggagacgctggtcctgctggc
cccaagggtgagcccggtagccctggtgaaaacggagctcctggtcagatgggcccccgg
ggtctgcctggtgagagaggtcgccccggagcccccggccctgctggtgctcgtgggaac
gatggtgctactggtgctgctggaccccccggtcccactggccccgccggtccccctgga
ttccctggtgctgttggtgctaagggtgaagctggtccccaaggagcccgtggctctgaa
ggtccccagggtgtgcgtggtgagcccggcccccctggccctgctggtgctgctggccct
gctggaaaccctggtgctgacggacagccgggtgctaaaggtgctaacggcgctcctggc
attgctggtgctcccggcttccctggtgcccgaggcccctctggaccccagggccccagt
ggtcctcctggtcccaagggtaacagcggtgaacctggtgctcccgggaacaaaggagac
actggtgccaagggagagcccggccccactggtattcaaggcccccctggccctgctggg
gaagaaggaaagcgaggagcccgaggtgaacccggacccaccggcctgcccggacccccc
ggcgagcgtggtggccctggtagccgtggtttccctggggcagacggcgtcgctggtccc
aagggccccgctggtgaacgtggttcccccggccccgctggccccaagggttctcctggt
gaagctggtcgccctggtgaagctggtctgcctggtgccaagggtctgactggaagtccc
ggcagccctggtccagatggcaaaaccggcccccctggtcccgctggtcaagatggtcgc
cccggacccccaggcccccccggtgcccgtggtcaggccggcgtgatgggattccctggg
cctaaaggtgctgctggagagcctggcaaggccggagagcgaggtgtgcctgggccccct
ggtgctgttggtcctgccggcaaagatggagaagctggagctcagggagcccccggccct
gctggccccgctggtgagagaggtgaacaaggccccgctggctcccccggattccagggt
ctccctggccccgctggtcctcctggtgaagcaggcaagcccggtgaacagggtgttcct
ggcgaccttggtgcccccggcccctccggagcaagaggcgagagaggtttccccggtgaa
cgcggcgtgcaaggcccccccggccccgcaggtccccggggagctaacggtgcccctggc
aatgatggtgctaagggtgatgctggtgcccccggagccccaggtagccagggcgctcct
ggccttcagggaatgcctggtgaacgaggcgcagctggtcttcccggccctaagggtgac
agaggcgatgctggtcccaaaggtgctgatggttctcctggcaaggatggtgtccgtggt
ctgactggccccattggtcctcctggccctgctggtgcccctggtgacaagggtgaagct
ggtcctagcggccccgctggtcccactggagctcgtggtgcccccggagaccgtggtgag
cctggtccccccggccctgctggtttcgctggcccccctggtgccgacggccaacctggt
gctaaaggcgaacccggtgatgctggtgctaaaggcgacgctggcccccctggccctgct
ggccccactggcccccctggccccattggtaacgttggtgctcctggacccaaaggtgct
cgtggcagtgccggtcctcctggtgctactggttttcctggtgctgctggccgagtcggc
ccccccggcccctctggaaatgctggaccccctggccctcctggccctgctggcaaagaa
ggcggcaaaggcccccgtggtgagaccggccccgccggacgtcccggtgaagtcggcccc
cccngcccccccggccccgctggcgagaaggggtcccctggtgctgacggacctgctggt
gctcccggcactcccggacctcaaggcattgctggacagcgtggtgtggtgggcctgccc
ggtcagcgaggagagagaggctttcccggtcttcccggcccctctggtgaacctggcaaa
caaggtccttctggagcaagtggtgagcgtggcccccctggtcccatgggcccccctgga
ttggctggaccccctggcgagtctggacgtgagggatctcctggtgctgaaggctccccc
ggacgagatggttctcctggccccaagggtgaccgtggtgagaccggcccttctggaccc
cctggtgctcctggtgctcctggagcccctggccctgttggccctgctggcaaaaatggc
gaccgtggcgagactggtcctgctggccctgccggcccgatcggccccgtgggtgctcgt
ggtccctctggaccccaaggtccccgtggtgacaagggtgagacaggcgaacagggtgac
agaggcataaagggtcaccgtggcttctctggtctccagggtccccctggtcctcccggc
tctcctggtgaacaaggtcctntcggagcttctggccctgctggtccccgaggtcccccc
ggttctgctggttctcctggcaaagacggactcaacggtctcccaggccccattggcccc
cctggtcctcgtggtcgcactggtgatgctggtcctgttggtccccccggccctcctgga
ccccccggcccccccggtcctcccagcggcggtttcgacttcagcttcctgccccagcca
cctcaagagaaggctcacgatggcggccgctactaccgggccgatgatgccaacgtggtc
cgcgaccgtgacctcgaggtggacaccaccctcaagagcctgagccagcagatcgagaac
atccggagccctgaaggaagccgcaagaacccagcccgcacctgccgcgaccttaagatg
tgccactctgactggaagagcggagaatactggattgaccccaaccaaggatgcaacctg
gatgccatcaaggtcttctgcaacatggagacaggcgagacctgcgtgtaccccacccag
ccccatgtggcccagaagaactggtacatcagcaagaaccccaaagacaagaggcacgtc
tggtacggcgagagcatgaccgacggattccagttcgagtacggcggccagggctccgat
cctgccgatgtagccatccagctgacgttcctgcgcctgatgtccaccgaggcgtcccag
aacatcacctaccactgcaagaacagcgtggcctacatggaccagcagactggcaacctc
aagaaggccctgctcctccagggctccaacgagatcgagatccgggccgagggcaacagc
cgcttcacctacagcgtcacctacgacggttgcacgagtcacaccggagcctggggcaag
acagtgatcgaatacaaaaccaccaagacctcccgcttgcccatcatcgatgtggcacca
ttggacgttggcgccccagaccaggaattcggcatggatgttggccctgtctgcttcttg
taa
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