Zalophus californianus (California sea lion): 113939588
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Entry
113939588 CDS
T07874
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
zca
Zalophus californianus (California sea lion)
Pathway
zca03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
zca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
113939588 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zca03400
]
113939588 (LIG3)
Enzymes [BR:
zca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
113939588 (LIG3)
DNA repair and recombination proteins [BR:
zca03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
113939588 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
113939588
NCBI-ProteinID:
XP_027481719
EnsemblRapid:
ENSZCAG00025020564
UniProt:
A0A6J2FNW3
LinkDB
All DBs
Position
16:22752955..22773516
Genome browser
AA seq
1024 aa
AA seq
DB search
MTLTFKILFPPTLRALRRKELCLFRQQHHWPDRRQFSHWSETDLLHGHCLLQRRKLALSF
QEGHLRPRATCLVLPGAHVGLCSGPCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG
KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQH
IADLSSKATGTPKKKTVVQAKLTATGQVTSPVKGASLVTNSNPRKFSGFSAKPNNSGGAR
SSPPPKASLSSSRCDPKHKDCLFREFRKLCAMVAENPSYNTKTQIIQDFLRRGSAGDSFH
GDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQ
SKSFPPAVKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL
KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGRRRALSVQASLMTP
VQPMLAEACKSIEHAMKKCPNGMFSEIKYDGERVQVHKKGDHFNYFSRSLKPVLPHKVAH
FKDYIPQAFPGGHSMILDSEVLLIDTKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF
NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKQVTVVSESPRTRAGPETSFLAGLPVS
QGCSHFLKAADLADMINRVIREGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEGAMADTA
DLVVLGAFYGQGSKGGMMSIFLMGCYDPSSQKWCTVTKCSGGHDDATLARLQKELDMVKI
SKDPSKIPGWLKINKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADGISIRFPRCTRI
RDDKDWKSATNLPQLKELYQLSKERADFTVAAQEEGSSTTGGSSGENGGASGPAGTRKAS
RASPKQPSPGTRKAGGRLSSPSSRGGQQQTVKAGRKRKAEETPCPDKVLLDIFTGVRLYL
PPSTPDFSRLRRYFVAFDGDLVQEFDMASATHVLGSGDKNPEAQQVSPEWIWACIRKRRL
LAPC
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgactttgactttcaagatcctcttcccaccaaccctccgtgcactcaggcgaaaagaa
ctgtgcctattccgacagcaacatcactggcctgacagaagacagttcagccattggtca
gaaacagatctgcttcatgggcactgcctcctccagagaagaaagcttgctctgtcattc
caggaaggccatctaagaccacgtgccacctgccttgttttgccaggggcgcatgtggga
ctctgcagtggcccctgtgagatggccgagcaacgattctgtgtggactatgccaagcgc
ggcacggcgggctgcaaaaagtgcaaggaaaagattgtgaagggggtgtgccggatcggc
aaagtggtgcccaaccccttttcagagtccgggggtgatatgaaagagtggtatcacatt
aaatgcatgtttgagaaactggagcgggcccgggctaccacaaaaaaaatcgaggacctc
acagagctggaaggctgggaagagctggaagacaatgagaaggaacagataagccagcac
attgcagatctgtcttctaaggcaacaggcacaccaaagaagaaaaccgtcgtgcaggct
aagctgacagccactggccaggtgacctctccagtgaaaggtgcctcacttgtcaccaat
agcaatccccggaaattttctggtttttcagccaagcccaacaactctgggggagcccgc
tcaagccctccccctaaggcaagtctgtcctcaagcagatgtgaccccaagcacaaggat
tgtctgtttcgcgagtttcggaagttgtgtgccatggtggctgagaatcctagctacaac
acgaagacccagatcatccaggactttcttcggagaggttcagcaggagatagtttccac
ggcgacgtgtacctgacagtgaagttgctgctgccgggtgttattaagagtgtttacaac
ttgaatgataagcagatcgtgaagcttttcagccgcattttcaactgcaacccagatgat
atggcacgagacctagagcagggcgacgtgtcggagaccatcagagtcttctttgagcag
agcaagtctttccccccagctgtcaagagcctccttactatccaggaggtggatgaattc
ctccttcggctctccaagctcaccaaggaggatgagcagcaacaggccctgcaggacatt
gcctccaggtgtacagccaatgacctcaagtgtatcatcaggttgatcaaacatgatctg
aagatgaactcgggtgcaaagcacgtgttagatgcccttgaccccaatgcctatgaagcc
ttcaaagcctcgcgcaacctgcaggacgtggtggagcgggtcctccgcaatgagcaggag
gtggagaaggagccaggccggagacgagctctgagcgtccaggcttccctgatgacgcca
gtgcagcccatgctggccgaggcttgcaagtccatcgagcacgcgatgaagaagtgtcct
aacggcatgttctctgagatcaagtacgatggggagcgagtgcaggtgcataagaagggg
gaccacttcaactacttcagccgcagcctcaagcctgtcctgcctcacaaggtggctcac
ttcaaggactacatcccccaggctttccccgggggccacagcatgatcttggactctgag
gtgctcctgattgacacgaagacaggcaaaccgctgccctttgggactctgggagtgcac
aagaaagctgccttccaggatgctaatgtttgcctatttgtttttgattgtatctacttc
aatgatgtcagcttgatggacaggcctctgtgtgagcggcggaagtttcttcatgataac
atggttgaaattcccaaccggatcatgttctcagaaatgaagcaagtcactgttgtctct
gagtctccacgtacgagggcaggccctgaaacatccttcctagctgggctccctgtgtct
caaggctgcagccactttctgaaagctgcggacttggccgacatgataaaccgggtcatc
cgagaggggctggaagggctggtgctgaaggacgtgaagggtacatatgagcctggaaag
cggcactggctgaaggtgaagaaagactatttgaacgagggagccatggcggacacagct
gacctggtggtccttggggccttctatgggcaagggagcaaaggtggcatgatgtccatc
ttcctcatgggctgctatgacccaagcagccagaagtggtgcacagtcaccaagtgttca
ggaggccacgatgacgcgacccttgcccgcctgcagaaggaactggacatggtgaagatc
agcaaggatcccagcaagatacccggctggctgaaaatcaacaagatctactatcctgac
ttcatagtcccagacccaaagaaagctgccgtgtgggagatcacgggggctgagttctcc
aagtctgaggcgcacacggccgacgggatctccatccggttcccacgttgcacccgcatc
cgtgatgataaagactggaaatctgccactaacctcccccaactcaaggaactgtaccag
ctgtccaaggagagggccgacttcaccgtggcggcccaagaggaggggagctccaccaca
gggggcagcagcggagagaacgggggtgcctcggggcctgcggggactcgcaaggcctcc
agggcctccccgaagcagccctcccccggcaccaggaaggcaggagggaggctgagtagc
cccagcagcagaggcggccagcagcagactgtgaaggcgggccggaagcggaaggccgag
gagaccccgtgcccagacaaggtgctgctggacatcttcacgggggtgcggctctacctg
ccaccctccacaccagacttcagccgcctcagacgctactttgtggcattcgatggggat
ctggtgcaggagtttgacatggcctcagccacacacgtgctgggtagcggggacaagaac
cctgaggcccagcaggtctccccggagtggatttgggcgtgtatccggaaacgaaggctg
ctggccccctgctag
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