Zingiber officinale (ginger): 121979999
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Entry
121979999 CDS
T08725
Name
(RefSeq) DNA ligase 6-like isoform X1
Organism
zof
Zingiber officinale (ginger)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DRMBL
DNA_ligase_A_C
UBA_4
RMMBL
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
121979999
NCBI-ProteinID:
XP_042387903
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Position
5A:complement(9849655..9867228)
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AA seq
1421 aa
AA seq
DB search
MTGPPSPSCSSSLFLSSYRSFSASLPPSPSLSPLAFRLLSAGSPLPPVPSDFPYSKLIPR
TRFVIDGFRSAGDFSVSYFLSHFHSDHYAGLSSAWCKGVIFCSAITARLLVEVLKVPPFF
VVSLSLGEVLEIDEWEVAAVDANHCPGAVQFLFRSRGSEGRRAERYIHTGDFRFHESMKL
DPVLCEFVGADAVFLDTTYCNPKFVFPSQEESVEHIVSTIKRIKEQNKETGESVLFLIAT
YVIGKEKILLEISRQCGCLLQVDSRKMQILSVLGLVDSGAFTQDTAVSNIHVIGWNVLGE
TWPYFRPNFGKMEEIMLERGYSKVVGFVSTGWMYETKKDGFAVRVKGSLEVHLVPYSEHS
NYDELREYVKFLRPKRVIPTVGVDIETPDSKHALAMKKHFRGLVDEMANKHDFLLALHRK
SDSADLISGNDITVDLNLHGDVDSENIPLQPDMQNFSRLNVEDMEGALKDLQDCLPSWVT
QIQSLELLKKFNGDIIAAVTEFFEHETEFYKQANATNNSIVSPCEKIETNLDLLFPLKSP
GEIPESGMKNFLSPVKQSVEQILKNTANPPLKKRSSDGGKNKKKKKMKGCPTLYKSGAKQ
SIITNFFKIASADASSSFTNVNTSRQQISSSIDEDPVAVKICKEDLDKFLQVINDGIPRE
SAATLMEKAKGNIDVAVDMYYCAFHNVLEDDENLITNNVLKTEGNLLPAADAPIIHLDKN
REKLYNSSSDRISLPTLYLKGNFREDKTATNVSLPIDKYCPIEYACWKAGEPSPYLHLAR
TFHLVEQEKGKIKTTTMLCNMFRSLLTLSPADVLPALYLCTNRIASDHENMELNVGGSLV
VTALEEACGTTRSKIKEMYNKFGDLGDVAQEIRQTQALLAPPSPILIHHLFCILREISVI
TGSGSALRRKNLIVNLMRSCREMEMKFLVRTLVRNLRIGAMMKTILSALAQAVVLNSLPP
LASVGISDTTKLQLQSVSAAVVEAFNVLPNLDVLIPSLLSKGLEFSARSIEMIPGTPILP
MLARITNGVIQVMKLFEGRAFTCEYKYDGQRAQIHRLADGSIRIFSRQMKETTSRFPDLV
NIIKDSCKAEASTFILDAEVVAVDRTNGRKLLSFQELSSRERGNKDSSISTEKIRVNICV
FIFDIMLCNGERLLDLPLRKRRKYIKDLFYMEKAGYLEFAKEITILTVFLKRDLSCTVSL
LIKVEADQAFTNNQVALDRVNLFFEEARNSSCEGIMVKTLDDFGYSASKRCEAWLKVKRD
YVEGIGDSLDLVLIGAWHGNGRKAGWYSPFLMACYNPDTEEFQSVCRVMSGFLDSFYLEM
KEFLSGEKLLPRKPSYYQTHETPDLWFHPELVWEIRGADLTISPVHHAAVGLVHPSRGIS
VRLPRYIRSQPDKTPEDCSTSSDIALMYKSQTRKMEVFTED
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgaccggccctccttccccttcctgctcctcctcccttttcctctcctcgtaccgctcc
ttctccgcctctcttcctcctagtccctccttatctcccctcgctttccgtctcctatcc
gctggctctcctctccccccggtgccctccgacttcccctactcgaagcttattccgagg
acgcgcttcgtaatcgacggtttccgctcagccggagacttctccgtctcctactttctt
tcccacttccactcagatcattacgccggcctcagcagcgcttggtgtaagggagtcatc
ttttgctcggcgatcaccgctcgtctccttgtcgaggtcctcaaggtccctcctttcttc
gtcgtttcactctcattgggtgaagtcttagagatcgacgaatgggaggttgctgccgta
gacgccaaccactgccccggcgccgtccagttcctttttaggtcacgtgggtccgaaggg
aggcgagcggaaaggtatattcacactggcgactttcgtttccatgaatcgatgaaactg
gatcctgttttgtgtgagttcgttggagcggatgctgttttcttggacacgacatattgt
aaccccaagtttgtcttcccatcgcaagaggaatcagtcgaacacatcgtgagcactatc
aaaagaattaaagagcaaaataaggaaacgggggaatcggttctttttctgatcgcgacc
tatgtaattggcaaagagaagattttgcttgagatttctcgtcagtgcggttgcctgctg
caagtggatagcagaaaaatgcagattttatctgttctgggccttgtcgattctggcgct
tttactcaggatactgccgtcagcaatattcacgttattggatggaacgtattgggtgag
acttggccttacttcaggcctaattttggaaagatggaggagattatgctggagagagga
tactctaaagtagtgggttttgtttcgacagggtggatgtatgaaacgaagaaagatgga
tttgcagtgagggttaagggttcgcttgaggttcatctggttccgtacagtgagcattcg
aactatgacgagttgagagaatatgtaaagttcttgaggccaaagcgagttataccaact
gttggagtggatattgagactcctgatagcaagcatgctttagctatgaagaagcatttc
agaggactagttgatgagatggcaaacaagcacgattttttgttggctttacacaggaag
tcagactctgctgatttaatatctgggaatgacataactgttgatcttaacctgcatggt
gatgtggattcagaaaatattccactgcaacctgacatgcaaaatttcagcaggctaaat
gttgaggacatggaaggtgcacttaaggaccttcaagattgcttgccatcttgggtaaca
cagattcagtcattagaattgctcaaaaagtttaatggagatatcattgctgcagttaca
gaatttttcgaacacgaaacagagttctataaacaagcaaatgccactaacaattctata
gttagcccttgtgaaaagattgagactaatcttgatctcttgtttcctcttaagtctcct
ggagagatccctgaatctggtatgaagaatttcctgagcccggtgaagcaatcagttgaa
caaattttgaaaaatacggcaaatccaccactcaaaaaaaggagctcagatggcggaaaa
aacaagaaaaaaaagaagatgaaaggttgcccgactttgtataaaagtggtgcaaagcaa
tctattatcactaattttttcaaaatagcttcagcagatgcatcttccagttttaccaat
gtgaatacttctaggcaacaaataagtagttcaatagatgaggatccggttgctgtaaaa
atctgtaaagaagatttggacaaatttcttcaggtcataaatgatggaataccacgggag
tctgctgcaacattgatggagaaggctaaaggaaatattgatgtagcagtggacatgtat
tattgtgctttccataatgtcttggaggatgatgagaatttgatcacaaataatgttttg
aaaactgaggggaacttactccctgcagctgatgcaccaattattcatttagataagaat
agagaaaagctgtacaattcatcttcagacagaataagcttaccaacattgtacttaaag
ggaaattttagagaagacaaaactgcaactaatgtatcgttaccaattgataaatattgc
cctattgagtatgcatgctggaaagctggagaaccttctccgtacttgcacttagcacga
acttttcacttagtggaacaagaaaaaggaaagataaagaccacaactatgctttgcaat
atgttcagaagcttgcttactctgtctcctgctgatgttttgcctgctctttatctgtgc
acaaatagaattgcttctgaccatgaaaatatggaactgaatgtcggtggaagtttagta
gtgacggcattggaagaggcttgtggaacaaccagatccaaaatcaaggaaatgtacaat
aaatttggtgatcttggtgatgttgcacaagaaatccgacaaacccaggctttacttgct
cctcctagtcccattttaattcaccatttattctgtattcttagagagatcagtgtgatc
acaggaagtgggagtgcccttcgcaggaaaaatctcattgtgaatctgatgcgttcctgt
agggaaatggaaatgaaatttcttgtcagaacattggttcggaatttgcgtattggtgca
atgatgaaaaccatcttgtcagcactagcacaagcagtggtattgaatagtctaccccct
ctagcgtctgttggaatttctgataccactaaattgcagcttcagagtgtttcagcagca
gttgtggaggcattcaatgtacttccaaatttggatgttcttattccttctcttttgagc
aaaggcttggaattttctgctcgttcaattgaaatgattccgggcacacctattctgccc
atgcttgccagaattaccaatggtgtcatacaagtgatgaaattgtttgagggtagagct
ttcacctgtgaatacaaatatgatggtcaaagggcccaaattcatagattagctgatggt
tctatacgaattttttcacgacaaatgaaggaaacaacatctagattcccagatttagtg
aacattatcaaagattcctgtaaagctgaagcttctacttttatattagatgcagaggtt
gttgctgtggacagaacaaatggcaggaaacttttgtcttttcaagagctatcttcaagg
gaaagaggaaataaggattcatcaatttcaacagaaaaaatcagagttaatatttgtgtc
ttcatatttgatatcatgctctgcaatggagaacggcttttggatctcccacttcgtaaa
aggagaaagtatataaaagatctattttatatggaaaaggcaggttacttggagtttgcc
aaggaaataactattttgactgtttttttaaagagggatttgtcatgcaccgtttctttg
ctgattaaggtggaagcagatcaagcattcaccaataatcaagtcgccttagatagagta
aatttattctttgaagaagcacggaattcttcttgtgaaggaattatggtgaagactcta
gatgattttgggtattctgcatcaaaacgttgtgaggcatggctgaaggtaaagcgtgat
tatgttgaaggaataggtgacagtcttgatcttgttcttatcggtgcttggcatggaaat
ggaagaaaagctggatggtatagccctttcctcatggcgtgctacaatccagatactgaa
gaatttcaaagtgtctgtcgcgtcatgtctggttttttagattcattttatttagagatg
aaagaatttctttctggggagaagttattgcccaggaagccatcttactaccaaacacat
gagacacctgatctctggtttcatccagaacttgtttgggaaataagaggtgcagacctc
acaatatcaccagttcatcatgctgctgttggtttagttcatccttcacgaggcatctcc
gtaagattgccaaggtacatccgatctcaaccagacaagacgcccgaagattgcagcact
tcttctgatattgctctcatgtataaatctcaaaccagaaaaatggaggtgttcacagaa
gattag
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