Zingiber officinale (ginger): 122034309
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Entry
122034309 CDS
T08725
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
122034309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
122034309
Enzymes [BR:
zof01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122034309
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
122034309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
122034309
NCBI-ProteinID:
XP_042449438
LinkDB
All DBs
Position
11B:5641952..5672781
Genome browser
AA seq
1106 aa
AA seq
DB search
MTDATVRFGLLVSMFQAMLRDRAAVKKRKRFRTFLDRVYTGREYFSAIRLILPGLDRERG
TYGLKESALAACLVDALGLAKDSPDALRLINWRKGGARSGANAGNFALVAAEVLQCRQGM
VSGGLTIKELNDMLDQLASTENKGEKASVLSSLIKKTNALEMKWILMIILKDLKLGISEK
SIFHEFHLDAEDLFNVTCDLKLVCEKLKDRTQRQKKQDIEVGKPVRPQLAMRVSDAMNAW
KKLHGKNVVVECKFDGDRIQIHKNGEEIHYFSRNFLDHTEYAHGMSNIIIQNVLVDRCIL
DGEMLVWDTSTQRFAEFGSNQEIAKAAREGLESYRQLCYVAFDILYVGDTSVIHQSLMER
HSLMQKVVRPLKGRLEILVPNGEPCWSVLANSVEDVERFFKATVENRDEGIVLKDLGSKW
EPSDRSGKWLKLKPDYIHAGSDLDVLIIGGYFGSGRRGGEVSQFLVGLAELSETAGYPKR
FISFCRVGSGLADEELNSLVAKLKPYFRKNEYPKSAPHCYVVTNNSKERPDVWIESPDKS
VILSINSDIRTVKSEVFMAPYGLRFPRITRVRYDKPWHDCLDLQSFVELVQSSNGNTWRT
NHPGLQSQNPKRTKTTKRGTRKNVSVISAHFIQTGISNIQEETFIFANMVFYFINAPQSL
SMDHLHKTVVENGGAFSMNLNDSVTHCIAAEKKGFRYQAAVHHGDVIHYSWVLDCCKQKR
LLHLQPKYFLHFSGSSRGKLVGEIDAFSDCYYIDIDVTDIKQIFNNMVGTEESNKVEHYK
SKYCPLQSLCFFRGCCIYVVEWMPSVDLDCKATSELVLRRLKLEITMYAGEVCDSLIRAT
HLIVYSQNERYNFDDLYNSFPLSQRRFLHQNKLHIVRHRWLEDSMKESKKLNEDAYSLKP
ESLESIEIDESENGVQLPASTSTTKNYNATNLVGRTEARKRARAPHRTTGKAKPRQTKRQ
RTRVGRRAAKIDKDESLSSDSEESNQEATELNETKHTGIERTKACDPLGQVGLPDKYPLE
LINKQDSVENKPELDVNSGQHEKLEQMADPLHAILLDMIPSLSQRKVEGESSAVEGKIPQ
IDNDANPVKKKKLSYKEVAGHLLKDW
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgacggacgctactgtgaggttcgggctgctggtcagcatgttccaggcgatgctccgc
gaccgggcggcagtcaagaagcggaaacggttccggacgttcctggatcgggtctacacc
ggccgcgagtacttcagcgccatccgcctcatcctccccggcctcgaccgcgagcgcggc
acctacggcctcaaggaatccgccctcgccgcgtgcctcgtcgatgctctaggcctcgcc
aaggactcccccgacgccctccgactcatcaactggcgcaagggtggcgcccgatccggc
gctaatgctggaaacttcgctcttgtggctgcggaggttcttcaatgcaggcaggggatg
gtttctggagggctcacaatcaaagagctgaatgatatgcttgatcaattagcatcaacg
gaaaacaagggagaaaaagcttcggttctgtcaagtctcataaagaaaacaaatgccttg
gaaatgaagtggattctcatgattatccttaaagatttaaagctgggaattagtgaaaaa
agcatatttcatgaatttcatcttgatgctgaagatttattcaatgtcacttgcgacctt
aaattagtatgtgaaaagttgaaagatcgcacacagcgacaaaagaaacaggatattgaa
gttgggaaacctgttaggcctcagttagctatgagagtcagtgatgctatgaatgcatgg
aaaaagcttcatggaaagaatgttgtcgttgagtgtaagtttgatggcgatcgcattcag
attcacaaaaatggagaggaaatccactatttctccagaaactttctcgatcatactgaa
tatgcacatggcatgtcaaatattattatacaaaacgtcctggttgacaggtgtatactg
gatggtgaaatgctggtttgggacacctctactcagcgttttgcagaatttggttcaaat
caagaaatagcaaaggctgctagggaagggctagagagttatcgccagttatgttatgta
gcatttgatattctctatgttggagacactagtgtgattcatcagagtttgatggaacga
catagtcttatgcagaaagttgtgagacccttgaagggacgcctagagatattggtacct
aatggtgaaccatgttggtctgttcttgctaacagtgtggaagatgtggaaaggttcttt
aaagccaccgttgagaatagagatgaaggaattgtgctgaaggatcttggatctaaatgg
gaacctagtgatcggagtggaaaatggttaaagctaaaacctgactatatacatgctggt
tccgatcttgatgttcttattattggtggttattttggttctggacgtcgtggaggcgag
gtgtctcagtttctagtgggtctcgctgagctttcagagacagctggctacccaaagaga
tttatatcattttgtcgagttggcagtggtcttgcggacgaggagttaaattctctagtt
gctaagctgaagccttatttcaggaaaaatgaataccccaaaagtgctccacattgttat
gtagttacaaataattcgaaggagaggccagatgtgtggatagagagccctgataaatct
gtcattctatctataaatagtgatatccggacagtaaaatcagaggtgtttatggcacca
tatggtctaaggttcccccgaattactcgggtgagatatgacaaaccatggcatgattgt
ctagatttgcaatcatttgtagaattggtccaatcgagcaatgggaatacatggcgaacc
aatcatccaggtcttcaaagtcaaaatccaaaacgcacaaaaaccacgaagagaggaaca
aggaagaatgtttctgtgatctctgctcattttatccagactggcatctcaaatattcaa
gaggaaaccttcatatttgctaacatggttttctactttatcaatgctcctcaatccctt
tcaatggaccatcttcacaagactgtggttgaaaatggaggagcattctcaatgaatctt
aatgattcagttactcattgcattgccgctgaaaagaaagggtttagatatcaggcagca
gttcaccatggagatgtcattcactattcttgggtcttggattgttgcaagcaaaagcgc
cttctacatctgcaaccaaagtacttcctgcatttttctggttcttcgaggggaaagctc
gttggcgagattgatgccttttcagactgttattacatcgatatagatgtcacagacatt
aagcaaatattcaacaacatggttggcacagaggaatcaaacaaggtagaacattacaaa
agcaaatactgtccactgcaaagtctgtgcttctttcgaggttgttgcatttacgtcgtt
gaatggatgcctagcgtagatttagactgcaaggcaacttcagagctagtgttgaggagg
ttgaaacttgaaataaccatgtatgctggagaagtttgtgatagtcttatacgtgctact
catttgatagtctattcacagaacgagaggtataactttgacgacttgtacaacagcttt
cctcttagccagagacgctttttacatcagaataagttacacatagtgaggcaccgatgg
ctggaagattccatgaaggaaagcaagaagctgaatgaagatgcctatagtttgaaacca
gaatccctagaaagtatagaaattgatgagagtgagaacggcgttcaactccctgcttct
acgagtactaccaagaactacaatgccacaaatctagtcggtagaactgaagcccggaaa
agagcaagggctccacatagaaccacaggaaaagcaaaaccaagacagactaaacgacaa
cgaaccagagtcggacgccgggctgctaaaatagacaaggatgaatcccttagcagtgac
tctgaagaaagtaatcaagaagccacagagttgaatgagaccaaacatacaggaattgaa
agaactaaagcatgtgaccctttaggtcaggttggattgcccgacaagtatccacttgaa
ttgattaataagcaagatagtgtggaaaacaaacccgaattggatgttaattcgggacaa
catgagaagttagaacaaatggcagatcctctgcatgccatattgctagacatgattccg
agtcttagccagaggaaagttgaaggtgagagttcagccgtagaaggtaagatacctcag
atagataatgatgcaaatccagtgaagaagaagaaactaagttataaggaagttgctggc
catcttctcaaagattggtga
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