Amycolatopsis albispora: A4R43_39315
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Entry
A4R43_39315 CDS
T05547
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aab
Amycolatopsis albispora
Pathway
aab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4R43_39315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aab03019
]
A4R43_39315
03400 DNA repair and recombination proteins [BR:
aab03400
]
A4R43_39315
Enzymes [BR:
aab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4R43_39315
Messenger RNA biogenesis [BR:
aab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A4R43_39315
DNA repair and recombination proteins [BR:
aab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A4R43_39315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Pribosyltran
AAA_22
Helicase_RecD
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
AXB47760
UniProt:
A0A344LI86
LinkDB
All DBs
Position
complement(8606727..8608856)
Genome browser
AA seq
709 aa
AA seq
DB search
MHPTESTDVTTLRHRSDELLRALAGEGAVLREDQWTAIEALVAHRRRALVVQRTGWGKSA
VYFLATALLREQGAGPTVIVSPLLALMRNQIAAAARAGIHAATMNSANQQDWDEVQADIT
AGRTDVLLVSPERLNNPDFRDNVLPKLTATAGLLVVDEAHCISDWGHDFRPDYRRLRTLL
GELPDGVPVLATTATANDRVVTDVADQLGVGSSGSGDALVLRGPLDRESLHLSVVRLPTA
EARLAWLAERLGELPGSGIIYTLTVAGAYDVARLLGEHGYPVAAYTGKTEPAERQAAEDD
LLANRVKALVATSALGMGFDKPDLGFVVHVGAPSSPIAYYQQVGRAGRGVRRAEVVLLPG
HEDVEIWRYFGSLAFPGKRVVDQLLDALAAADRPLSTAALEPKVELSRTRLEMVLKVLDV
DGAVRRVRGGWESTGQPWEYDAQRYQRVSEARNAEQQAMLDYQNTSGCRMEFLLSQLDDP
HAAPCGRCDNCTGKHLSAEVSESVVDKTAQDLRRPGVELASRRQWPTGMAGLGIKASGKI
AAGEQTEPGRALGRLTDIGWGNRLRELVGDSAADGEVPEAVFQACVQVLAAWDWAERPVA
VVSLPSSTRPTLVRDFAQRIARIGRLDYLGELAADGERPRRANSAQRVADLWHRLSLPPE
LAEAVAGLSGPVLLIDDVADTGWTMAIAARLLRQAGAPAVLPFALASTS
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtgcaccccaccgaaagcaccgacgtcacgaccctgcggcaccgttccgacgagctgctt
cgcgcgctcgcgggcgagggtgccgtcctgcgtgaggaccagtggaccgcgatcgaggcg
ctggtcgcccaccggcggcgtgcgctggtggtgcagcgcaccggctggggcaagtcggcg
gtgtacttcctggccaccgcgctgctgcgggagcagggcgcggggccgacggtgatcgtc
tcgccgctgctggcgctgatgcgcaaccagatcgccgccgccgcgcgggccgggatccac
gcggccaccatgaactcggccaaccagcaggactgggacgaggtgcaggccgacatcacc
gccggtcgcaccgacgtgctgctggtcagccccgaacggctgaacaacccggacttccgc
gacaacgtgctgccgaagctgaccgccaccgccgggctgctggtggtcgacgaggcgcac
tgcatctccgactggggccacgacttccgccccgactaccgccgcctgcgcacgctgctc
ggcgagctgcccgacggcgtgccggtgctggccaccaccgcgacggccaacgaccgggtg
gtcaccgacgtggccgaccagctcggcgtcggctccagcggttccggggacgcgctggtg
ctgcgcggtccgctcgaccgcgagagcctgcacctgtcggtggtccggctgcccaccgcc
gaggcccggctggcctggctggccgaacggctcggcgagctgcccggctccggcatcatc
tacacgctcaccgtcgccggtgcctacgacgtggcgcggctgctcggcgagcacggttac
ccggtcgccgcctacaccggcaagaccgagcccgccgagcgccaggccgccgaggacgac
ctgctagccaaccgggtcaaggcgctggtcgccacctccgcgctgggcatgggcttcgac
aagccggacctcggttttgtggtgcacgtcggcgcgccgtcctcgccgatcgcctactac
cagcaggtcggccgcgccgggcgcggtgtgcgccgtgccgaggtggtgctgctgcccggg
cacgaggacgtggagatctggcggtacttcggttcgctggccttccccggcaagcgcgtg
gtcgaccagctgctggacgcgctggccgccgccgaccgtccactgtcgacggcggcgctc
gagccgaaggtggagctttcgcgcacccgcttggaaatggtgctcaaggtgctcgatgtg
gacggtgcggtgcgccgggtccgcggtggctgggagagcaccgggcagccgtgggagtac
gacgcgcagcgctaccagcgggtcagcgaggcccgcaacgccgagcagcaggcgatgctc
gactaccagaacacctccggctgccggatggagttcctgctctcgcagctggacgatccg
catgccgcgccctgcggccggtgcgacaactgcaccggcaagcacctctcggccgaggtg
tccgagtccgttgtggacaagacggcgcaggacctgcggcggccgggcgtcgagctggcg
tcgcggcggcagtggccgaccggcatggccgggctgggcatcaaggcgtccggcaagatc
gccgcgggtgagcagaccgagccgggccgtgcgctcggcaggctgaccgacatcggctgg
ggcaatcgcttgcgcgagctggtcggcgactcggcggccgacggcgaggtgcccgaagcg
gtgttccaggcctgcgtgcaggtgctcgccgcctgggactgggccgagcggccggtcgcg
gtggtgtcactgccgtcgagcacccgcccgacgctggtgcgcgacttcgcgcagcgcatc
gcacgcatcggcaggctggactacctgggtgaactcgccgccgacggcgaacggccgcgc
cgggcgaacagcgcgcagcgcgtggccgacctgtggcaccggctgtcgctgccgccggaa
ctggccgaggcggtcgccgggctgtccggtccggtgctgctgatcgacgacgtggccgac
accggctggacgatggccatcgccgcccggctgctgcgccaggcgggcgcgcccgccgtg
ctgcccttcgcgctggccagcacttcctag
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