Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446: Aaci_1648
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Entry
Aaci_1648 CDS
T00985
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aac
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
Pathway
aac03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Aaci_1648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aac03400
]
Aaci_1648
Enzymes [BR:
aac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Aaci_1648
DNA repair and recombination proteins [BR:
aac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Aaci_1648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ACV58660
UniProt:
C8WX38
LinkDB
All DBs
Position
complement(1717916..1718833)
Genome browser
AA seq
305 aa
AA seq
DB search
MKRHESPPTLTHGDKIYFPAAGLCKRDYMTYLAQIGEHLVRHLRHRPVTLVRCPDGVAGR
RFYQRHLPPHAPPSLPRREVQGERPLIAIPDVETLLYYGNLGAIEFHAGLHLVQGPQAGC
PTALTFDLDPSDPRDFERVRELALCLREVLRGLGLDGVAKTTGASGLQVLVPLEEPLPYA
VTRPVVNFVAAYCASRWPDLATTERRVRHRGRRVYVDAPQHGPTRTLIAAYSVRAVEKAL
VSAPITWAELEYGVSPDAFDLHVVPDRLERVGDWLELAARHPASRVRAIHDALPPPWRQT
RVRSV
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgccatgaaagtccgccgacgctcacccatggggacaagatctacttccctgcc
gcggggctctgcaagcgcgactatatgacctatcttgcccaaatcggcgagcacttggtc
cgacatctgcgccatcggcccgtcacgttggttcggtgcccggacggcgtggccggccgc
cgattttatcagcggcatcttccgccacacgcacctccgagcctgccgcgcagagaggtc
caaggcgaacgcccgttgattgccatcccggacgtcgagacgctcttatactacggaaac
ttgggcgccatcgagttccacgcgggtctgcatctcgtccaaggtcctcaagcgggatgc
ccgacggcgctcacgttcgatctcgacccttccgatccgcgcgacttcgagcgcgtgcga
gagctcgcgctgtgcctgcgcgaggtgcttcgcggcctcggcctcgacggcgtggcgaag
accacgggggcgtccggcctgcaggtgttggtcccgcttgaggagccgctcccgtacgcc
gtcacgcggccggtggtcaacttcgtcgcggcgtactgtgcgtcgcgctggccggatctg
gccaccaccgagaggcgcgtgcgccatcggggccgccgggtgtacgtggacgcgccgcag
cacgggccgacgcgcacgctgatcgcggcgtacagcgtgcgcgcggtggagaaagcgctg
gtgtcggcgcccatcacatgggcagaactggaatacggggtgtcgcccgacgcgtttgat
ctccacgtggtgcctgacagattggagcgggtgggcgattggctggagctcgcggcgcgt
caccccgcctctcgcgtacgggccatccacgacgcgctccccccgccttggcgacaaacg
cgcgtccgttcagtataa
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