Amycolatopsis acidiphila: LWP59_20600
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Entry
LWP59_20600 CDS
T07896
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aacd
Amycolatopsis acidiphila
Pathway
aacd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aacd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LWP59_20600 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aacd03400
]
LWP59_20600 (ligD)
Enzymes [BR:
aacd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LWP59_20600 (ligD)
DNA repair and recombination proteins [BR:
aacd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LWP59_20600 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UIJ56593
LinkDB
All DBs
Position
4228731..4230743
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AA seq
670 aa
AA seq
DB search
MARVAPSARSRVPDWVEPMLAKPDGGRLRSGPGWAYEYKLDGYRCAMRIAPSGTTVLTSR
NGIDFTDEFPTLAGALGVALGGRAAVLDGEIVACNEAGQIEFGLLQERRGRYQKYRTAGH
HEPFEDARVRFLAFDLLQLGDTRLLEQPYDERRRLLAALPMPAPDRVSIVPAFTFDELAG
DGLTPQDLLDRAGSEGYEGLIAKLRSSIYVPGHRPDAWLKHPLIQTQEVILCGWRPGQRG
FTGTLGSLLLGAHDPGTGDLVYLGDVGTGFSRHERAELQARLEELERRTHPFATAPPRED
VVRAHWVEPVLVGEVQYRQFTRGAGRLRHTSWRGLRADRSPDEVIAPRAVEPAAAPPPPA
KRITVQAGKRRLTLSNLDKPLYPDGFTKGEVINYYSHIAPVLLPHLAGRPVTFIRFPDGV
GGQQFFEKNVAKGAPDWLRTVVLPSSGSRGNGDSVEYALIEELAALVWAANMAALELHVP
QWKVGREAKARHPDRLVFDLDPGEGTTIVECCRVAERLHDALVADGLTPYAKTSGSKGMQ
VCAGIRTRSPRAPSAYAKALAEQFAAQTPALVTAKMAKALRPGKVFIDWSQNNPAKTTIA
AYSLRGRDRPTVSTPLTWDEVRACRRAAELVFTADDVLGRVEDLGDLMAGIDDTRARLPN
RLPDGHRTAS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgtcgccccgagtgcccggtcccgcgtcccggactgggtcgagccgatgctc
gccaagcccgacggtggccggctgcgcagcgggcccggctgggcctacgagtacaagctg
gacggctaccgttgcgccatgcggatcgccccgtccggcacgacggtgctgaccagccgc
aacgggatcgacttcaccgacgagttccccaccctcgccggcgcgctcggcgtcgccctc
ggcggccgtgccgccgtgctcgacggcgagatcgtcgcgtgcaacgaagccggccagatc
gagttcggcctcctgcaggaacgccggggccgctaccagaagtaccgcaccgcgggccac
cacgagccgttcgaggacgcccgggtgcggttcctggcgttcgacctgctccagctgggc
gacacccggctgctggagcagccctacgacgagcgccgccggctgctcgccgcgctgccg
atgcccgcgccggaccgggtgtcgatcgtgcccgccttcaccttcgacgagctcgccggc
gacgggctcaccccgcaggacctgctcgaccgggccggctccgaggggtacgagggcctg
atcgcgaagctgcgcagctcgatctacgtgccggggcaccgccccgacgcgtggctgaag
catccgctgatccagacccaggaggtcatcctgtgcggctggcggccggggcagcgcggg
ttcaccggcacgctcggcagcctcctgctcggcgcgcacgaccccggcaccggcgacctg
gtctacctcggcgacgtcggcaccgggttcagccggcacgagcgagccgagctgcaggcc
cggctggaagagctcgaacgccgcacgcacccgttcgccaccgccccaccgcgggaggac
gtcgtgcgtgcccactgggtcgagccggtgctcgtcggcgaggtccagtaccggcagttc
acccgcggcgcgggccgcctgcggcacacgtcctggcggggcctgcgcgccgaccgcagc
cccgacgaggtgatcgcgccccgtgccgtcgagccggccgcggccccgccgcccccggct
aagagaatcaccgtgcaggccggaaaacgacggctcacactgtccaacctggacaagccg
ctgtacccggacggcttcaccaagggcgaggtcatcaactactactcgcacatcgcgccc
gtgctcctgccccacctggcgggccgtccggtcacgttcatccggttcccggacggcgtc
ggcgggcagcagttcttcgagaagaacgtggccaagggcgcgccggactggctgcgcacc
gtagtgctgcccagcagcggctcccgcggcaacggcgactccgtcgagtacgcgctgatc
gaggagctggccgcgctcgtgtgggcggccaacatggccgcgctcgagctgcacgttcca
cagtggaaggtgggccgcgaggcgaaggcccggcacccggaccgcctcgtgttcgacctc
gaccccggcgaggggaccaccatcgtggagtgctgccgggtggccgagcggctgcacgac
gcgctcgtcgccgacgggctcaccccctacgccaagacctcgggctccaaggggatgcag
gtctgcgccggcatccggacccgcagcccgcgggcgccctcggcctacgccaaggcgctc
gccgagcagttcgcggcgcagacccccgcgctggtcaccgcgaagatggccaaggcactg
cgcccgggcaaggtgttcatcgactggagccagaacaaccccgcgaagaccaccatcgcg
gcgtactcgctgcgcggccgcgaccggcccaccgtctccaccccgctcacctgggacgag
gtgcgcgcctgccgccgcgccgcggagctggtcttcaccgccgacgacgtcctcggccgg
gtcgaggacctcggcgacctgatggccggcatcgacgacacccgggcccggctgccgaac
cgtcttccggacgggcaccggacggcgtcatga
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