Amycolatopsis acidiphila: LWP59_34070
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Entry
LWP59_34070 CDS
T07896
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aacd
Amycolatopsis acidiphila
Pathway
aacd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aacd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LWP59_34070 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aacd03400
]
LWP59_34070 (mfd)
Enzymes [BR:
aacd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LWP59_34070 (mfd)
DNA repair and recombination proteins [BR:
aacd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LWP59_34070 (mfd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UIJ64067
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All DBs
Position
complement(6970641..6974189)
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AA seq
1182 aa
AA seq
DB search
MSGLLSSVLADPALRGVIERAGSPLLDLQGPTAVRQLVVAALAADEGAGRPVLAVTATGR
ESEELTAALAGLLGPGAVADFPSWETLPHERLSPRADTVGRRLDVLHRLRGADAPRVVVS
TVRSLIQPMAPGLGALAPIDLVVGEENDFEGVLERLVVLAYTRVDMVEKRGEFAVRGGIL
DVFPPTADHPYRVEFWGDEVSEIRAFAVSDQRSLPGEIQAVHAPPCRELLLTPEVKARAG
ELAEQYAADAQLAEMLTKLAGGIPSEGMEALIPVLCEGELELLSDAMPEGTHVVLADPEK
IRARAHDLVRTGQEFLEASWMAAAGGGQAPIDLGASAYRDLAEVAKHAGETNRAWWTLSQ
LTSEDVHQVAIEPAPAYRGDLERAIADLRAHLAASGTGVLVVAGHGTATRAVEQLSSAEV
ATTLAEDGLVKEPTPGVVTVVCGGLTDGFIAPELRLVVLTESDLTGRGATAGSSTRDLDT
KMPSRRRNAVDPLALKKGDYVVHDQHGIGRFVEMVQRTISGATREYLVLEYASSKRGHPG
DRLYVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKARKAVKEIAAELVQLYAARQAA
PGHPFGQDTPWQRELEDAFPFTETNDQLAAIDEVKSDMERGVPMDRVICGDVGYGKTEIA
VRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFTERMQAFPVTIKGLSRFTDKSEVDGVLSG
LADGDVDIVIGTHRLLQTGVRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATP
IPRTLEMSLAGIREMSTILTPPEDRHPILTYVGAYDDKQVSAAIRRELLRDGQVFYVHNR
VSSIEKSARRLRELVPEARIVTAHGQMNEEKLEKVIQGFWEREYDVLVSTTIVETGLDIS
NANTLIVERGDLLGLAQLHQLRGRVGRGRERGYAYFLYPGESPLTETAHDRLATIAQNTE
LGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVDVFRRSAGAEPAEDE
ELGEVRVDLPIDAHIPHDYVPGERLRLEAYRKIAAAPDETGLAAVEEELVDRYGRPPAPV
HRLLAVARFRHACRAAGVTEVTLQGNTVRFSPLPLPDSKLVRLKRLYPKAMFKAVTNTVS
VPKPTEGPAGGRIGAPPLRDEALLEWCSKLLTNLTKEPAAVG
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
ttgtccggtctgctgtcgtccgttctcgccgatcccgcgctgcgtggcgtcatcgagcgg
gccggttcaccgctgctcgacctgcagggcccgacggccgtgcgccagctcgtcgtcgcc
gcgctcgcggccgacgagggcgccggccgtccggtgttggccgtcaccgcgaccggccgc
gagtccgaggagctgaccgccgcgctggccggcctgctcggcccgggcgcggtcgccgat
ttcccgtcgtgggagacgctgccgcacgagcggctgtccccgcgcgcggacaccgtcggc
cgacggctcgacgtgctgcaccggctgcgcggcgccgacgcgccgcgggtggtggtctcg
accgtgcgcagcctgatccagccgatggcacccggcctcggcgcgctggcgccgatcgac
ctggtcgtcggcgaggagaacgacttcgaaggcgtgctggagaggctcgtcgtactcgcg
tacacgcgggtggacatggtcgagaagcgcggcgagttcgccgtgcgcggcggcatcctc
gacgtgttcccgccgaccgcggaccacccgtaccgcgtcgagttctggggcgacgaggtc
agcgagatccgcgcgttcgcggtgtcggaccagcggtcgctgcccggggagatccaggcc
gtgcacgcgccgccgtgccgcgagctgctgctcacccccgaggtcaaggcgcgtgccggt
gagctggccgagcagtacgcggccgacgcgcaactcgccgagatgctcaccaagctcgcc
ggcggcatcccgtcggagggcatggaagcgctcatcccggtgctctgcgagggcgagctg
gagctgctgagcgacgcgatgcccgagggcacccacgtcgtgctcgccgacccggagaag
atccgtgcgcgggcgcacgacctggtgcgcaccgggcaggagttcctggaggcgtcgtgg
atggccgcggccggtggcggccaggcgcccatcgacctcggcgcgtccgcgtaccgcgac
ctcgcggaggtcgcgaagcacgcgggcgagaccaaccgggcgtggtggacgttgtcccag
ctgaccagcgaggacgtgcaccaggtcgcgatcgagccggcgcccgcgtaccgcggtgac
ctggagcgcgccatcgccgacctgcgcgcccacctcgcggcgagcggcaccggcgtgctg
gtcgtggccgggcacggcaccgccacccgcgccgtcgagcagctctcgagcgccgaggtg
gccacgaccctggccgaggacgggctcgtcaaggagcccacgcccggcgtcgtgaccgtc
gtctgcggcgggctgaccgacgggttcatcgcgccggagctgcggctggtcgtgctcacc
gagtccgacctcaccggccgcggcgcgacggctggatcgtccacaagggacctcgacacg
aagatgccgtcccggcggcgcaacgcggtcgacccgctcgcgctcaagaagggcgactac
gtcgtgcacgaccagcacggcatcgggcggttcgtcgagatggtgcagcgcacgatctcc
ggcgccacccgcgagtacctcgtgctcgagtacgcgtcgtccaagcgcggccacccgggc
gaccggctgtacgtgccgaccgaccagctcgacgaggtctcccgctacgtcggcggcgag
ctgcccacgctgaacaagctcggcggctcggactggaagaacaccaaggcgaaggcacgc
aaggcggtcaaggagatcgccgcggagctggtgcagctctacgccgcccgccaggccgcg
cccggccacccgttcggccaggacacgccgtggcagcgcgagctggaggacgccttcccg
ttcaccgagaccaacgaccagctcgccgccatcgacgaggtcaagtcggacatggagcgc
ggggtgccgatggaccgcgtgatctgcggcgacgtcggctacggcaagaccgagatcgcg
gtgcgggcggcgttcaaggcggtgcaggacggcaagcaggtcgcggtgctggtgcccacg
accctgctggcccagcagcacctcaacacgttcaccgagcgcatgcaggcgttcccggtg
accatcaagggcctgtcccggttcaccgacaagtccgaagtggacggtgtgctgtccggg
ctcgccgacggcgacgtggacatcgtcatcggcacccaccgcctgctgcagaccggggtc
cgctacaaggatctcgggctggtgatcgtggacgaggagcagcggttcggcgtcgagcac
aaggagcacatcaaggcgctgcgcacgcacgtcgacgtgctgacgatgtcggcgaccccg
attccccggacgctggagatgtcgctcgcgggcatccgcgagatgtcgacgatcctgacc
ccgcccgaggaccggcaccccatcctgacctacgtcggcgcctacgacgacaagcaggtg
agcgccgcgatccgccgcgagctgctgcgcgacggccaggtcttctacgtgcacaacagg
gtttcctcgatcgagaagtccgcgcggcggttgcgcgagctggtcccggaggcacggatc
gtgaccgcacacggccagatgaacgaggagaagctcgagaaggtcatccagggcttctgg
gagcgcgagtacgacgtgctcgtctcgacgacgatcgtggagaccgggctggacatctcc
aacgccaacacgctcatcgtcgagcgcggtgacctgctcggcctggcacagctgcaccag
ctgcgcggccgtgtcgggcgtgggcgcgagcgcgggtacgcgtacttcctctaccccggt
gagtcgccgctgaccgagaccgcgcacgaccggctcgcgacgatcgcgcagaacaccgaa
ctgggcgcgggcatggcggtcgcgatgaaggacctggagatccgcggcgcaggcaacatc
ctcggcgccgagcagtccgggcacatcgccggtgtcggcttcgacctgtacgtccggttg
gtcggcgaggcagtggacgtgttccgccgcagcgccggggccgagcccgccgaggacgag
gagctcggcgaggtccgggtcgacctgcccatcgacgcgcacatcccgcacgactacgtg
ccgggggagcggctgcggctggaggcgtaccgcaagatcgcggcggcgcccgacgagacc
gggctggcggcggtcgaggaggagctcgtcgaccgctacggccggccgcccgcaccggtg
caccggctgctcgcggtggcgcggttccggcacgcctgccgcgcggcgggggtgaccgag
gtgacgttgcagggcaacaccgtccggttctcgccgctgccgctgccggactcgaaactg
gtccggctcaagcggttgtacccgaaggcgatgttcaaggccgtgacgaacaccgtgtcg
gtgccgaaaccgacggagggcccggccggtggccgcatcggcgccccgccgctgcgggac
gaggcgttgctggagtggtgctcgaaactgctgaccaacctgacgaaggaacccgcggcg
gtcggctga
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